RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 LVRNQ6Q4G3 990 aa11.3□□□□□ -0.6
CCDC171-208ENST00000486641 IZUMO2Q6UXV1 221 aa11.3□□□□□ -0.6
CCDC171-208ENST00000486641 SYDE1Q6ZW31 735 aaPredicted RBP11.3□□□□□ -0.6
CCDC171-208ENST00000486641 ZNF804AQ7Z570 1209 aa11.3□□□□□ -0.6
CCDC171-208ENST00000486641 ZNF564Q8TBZ8 553 aaPredicted RBP11.3□□□□□ -0.6
CCDC171-208ENST00000486641 SPIRE2Q8WWL2 714 aa11.3□□□□□ -0.6
CCDC171-208ENST00000486641 DYDC2Q96IM9 177 aa11.3□□□□□ -0.6
CCDC171-208ENST00000486641 GPCPD1Q9NPB8 672 aa11.3□□□□□ -0.6
CCDC171-208ENST00000486641 UBE2TQ9NPD8 197 aaPredicted RBP11.3□□□□□ -0.6
CCDC171-208ENST00000486641 STK32BQ9NY57 414 aa11.3□□□□□ -0.6
CCDC171-208ENST00000486641 SMG5Q9UPR3 1016 aaKnown RBP11.3□□□□□ -0.6
CCDC171-208ENST00000486641 TBC1D30Q9Y2I9 924 aa11.3□□□□□ -0.6
CCDC171-208ENST00000486641 SNED1Q8TER0 1413 aa11.3□□□□□ -0.6
CCDC171-208ENST00000486641 MAST2Q6P0Q8 1798 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 WDR91A4D1P6 747 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 TYROBPO43914 113 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 SPATA31C1P0DKV0 1188 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 TPP2P29144 1249 aaPredicted RBP11.29□□□□□ -0.6
CCDC171-208ENST00000486641 CETN2P41208 172 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 USP46P62068 366 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 NSMFQ6X4W1 530 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 RELL1Q8IUW5 271 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 PDCD7Q8N8D1 485 aaKnown RBP11.29□□□□□ -0.6
CCDC171-208ENST00000486641 LMO3Q8TAP4 145 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 ZNF398Q8TD17 642 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 CELF1Q92879 486 aaKnown RBP11.29□□□□□ -0.6
CCDC171-208ENST00000486641 MRRFQ96E11 262 aaKnown RBP11.29□□□□□ -0.6
CCDC171-208ENST00000486641 CENPKQ9BS16 269 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 TUBB6Q9BUF5 446 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 DCLK3Q9C098 648 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 MMADHCQ9H3L0 296 aaPredicted RBP11.29□□□□□ -0.6
CCDC171-208ENST00000486641 LRRC4BQ9NT99 713 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 ETNK2Q9NVF9 386 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 ANKFY1Q9P2R3 1169 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.29□□□□□ -0.6
CCDC171-208ENST00000486641 ITGB4P16144 1822 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 A0A0G2JND7 137 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 GAS8O95995 478 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 NMT1P30419 496 aaKnown RBP11.29□□□□□ -0.6
CCDC171-208ENST00000486641 PIK3CAP42336 1068 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 ERFP50548 548 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 MYL7Q01449 175 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 IZUMO3Q5VZ72 239 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 SLC5A5Q92911 643 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 RBM15Q96T37 977 aaKnown RBP eCLIP11.29□□□□□ -0.6
CCDC171-208ENST00000486641 FAM118BQ9BPY3 351 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 ECSITQ9BQ95 431 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 MAK16Q9BXY0 300 aaKnown RBP11.29□□□□□ -0.6
CCDC171-208ENST00000486641 R3HDM2Q9Y2K5 976 aaKnown RBP11.29□□□□□ -0.6
CCDC171-208ENST00000486641 NEU2Q9Y3R4 380 aa11.29□□□□□ -0.6
CCDC171-208ENST00000486641 PHLPP1O60346 1717 aa11.28□□□□□ -0.6
CCDC171-208ENST00000486641 COL5A2P05997 1499 aaPredicted RBP11.28□□□□□ -0.6
CCDC171-208ENST00000486641 A6NJR5 290 aa11.28□□□□□ -0.6
CCDC171-208ENST00000486641 RNASEH1O60930 286 aaKnown RBP11.28□□□□□ -0.6
CCDC171-208ENST00000486641 CAMTA2O94983 1202 aa11.28□□□□□ -0.6
CCDC171-208ENST00000486641 SGPL1O95470 568 aa11.28□□□□□ -0.6
CCDC171-208ENST00000486641 FAM200BP0CF97 657 aa11.28□□□□□ -0.6
CCDC171-208ENST00000486641 TROVE2P10155 538 aaKnown RBP eCLIP11.28□□□□□ -0.6
CCDC171-208ENST00000486641 ANPEPP15144 967 aa11.28□□□□□ -0.6
CCDC171-208ENST00000486641 SERPINB3P29508 390 aa11.28□□□□□ -0.6
CCDC171-208ENST00000486641 CYP2J2P51589 502 aa11.28□□□□□ -0.6
CCDC171-208ENST00000486641 DSG1Q02413 1049 aa11.28□□□□□ -0.6
CCDC171-208ENST00000486641 HP1BP3Q5SSJ5 553 aaPredicted RBP11.28□□□□□ -0.6
CCDC171-208ENST00000486641 MARK2Q7KZI7 788 aaKnown RBP11.28□□□□□ -0.6
CCDC171-208ENST00000486641 TXNRD3Q86VQ6 643 aa11.28□□□□□ -0.6
CCDC171-208ENST00000486641 ARHGEF19Q8IW93 802 aa11.28□□□□□ -0.6
CCDC171-208ENST00000486641 STKLD1Q8NE28 680 aa11.28□□□□□ -0.6
CCDC171-208ENST00000486641 GRK7Q8WTQ7 553 aa11.28□□□□□ -0.6
CCDC171-208ENST00000486641 FNBP1Q96RU3 617 aa11.28□□□□□ -0.6
CCDC171-208ENST00000486641 CCDC28BQ9BUN5 200 aa11.28□□□□□ -0.6
CCDC171-208ENST00000486641 JMJD4Q9H9V9 463 aa11.28□□□□□ -0.6
CCDC171-208ENST00000486641 ACP6Q9NPH0 428 aa11.28□□□□□ -0.6
CCDC171-208ENST00000486641 FBXO6Q9NRD1 293 aaPredicted RBP11.28□□□□□ -0.6
CCDC171-208ENST00000486641 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.28□□□□□ -0.6
CCDC171-208ENST00000486641 PNMA6FA0A0J9YX94 578 aa11.27□□□□□ -0.6
CCDC171-208ENST00000486641 A8MXQ7 604 aa11.27□□□□□ -0.6
CCDC171-208ENST00000486641 TULP1O00294 542 aaPredicted RBP11.27□□□□□ -0.6
CCDC171-208ENST00000486641 HNRNPRO43390 633 aaKnown RBP11.27□□□□□ -0.6
CCDC171-208ENST00000486641 ABHD2P08910 425 aa11.27□□□□□ -0.6
CCDC171-208ENST00000486641 BCRP11274 1271 aa11.27□□□□□ -0.6
CCDC171-208ENST00000486641 ESRRAP11474 423 aaPredicted RBP11.27□□□□□ -0.6
CCDC171-208ENST00000486641 ATF3P18847 181 aa11.27□□□□□ -0.6
CCDC171-208ENST00000486641 PGM1P36871 562 aa11.27□□□□□ -0.6
CCDC171-208ENST00000486641 SPIRE1Q08AE8 756 aa11.27□□□□□ -0.6
CCDC171-208ENST00000486641 ERFEQ4G0M1 354 aa11.27□□□□□ -0.6
CCDC171-208ENST00000486641 ACBD5Q5T8D3 534 aaPredicted RBP11.27□□□□□ -0.6
CCDC171-208ENST00000486641 C16orf86Q6ZW13 317 aa11.27□□□□□ -0.6
CCDC171-208ENST00000486641 ZNF365Q70YC5 407 aa11.27□□□□□ -0.6
CCDC171-208ENST00000486641 TDRPQ86YL5 185 aa11.27□□□□□ -0.6
CCDC171-208ENST00000486641 ADGRF4Q8IZF3 695 aa11.27□□□□□ -0.6
CCDC171-208ENST00000486641 ZNF276Q8N554 614 aa11.27□□□□□ -0.6
CCDC171-208ENST00000486641 RDH13Q8NBN7 331 aa11.27□□□□□ -0.6
CCDC171-208ENST00000486641 NAT14Q8WUY8 206 aa11.27□□□□□ -0.6
CCDC171-208ENST00000486641 HIC2Q96JB3 615 aa11.27□□□□□ -0.6
CCDC171-208ENST00000486641 CFAP57Q96MR6 1250 aa11.27□□□□□ -0.6
CCDC171-208ENST00000486641 BHMT2Q9H2M3 363 aa11.27□□□□□ -0.6
CCDC171-208ENST00000486641 PSTPIP2Q9H939 334 aa11.27□□□□□ -0.6
CCDC171-208ENST00000486641 ZNF287Q9HBT7 754 aa11.27□□□□□ -0.6
CCDC171-208ENST00000486641 SAYSD1Q9NPB0 183 aa11.27□□□□□ -0.6
CCDC171-208ENST00000486641 HSFX1Q9UBD0 423 aa11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms