RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 SPTBN5Q9NRC6 3674 aaKnown RBP16.04■□□□□ 0.16
USP4-212ENST00000486549 VWA8A3KMH1 1905 aa16.04■□□□□ 0.16
USP4-212ENST00000486549 GRXCR2A6NFK2 248 aa16.03■□□□□ 0.16
USP4-212ENST00000486549 I3L4J1 428 aa16.03■□□□□ 0.16
USP4-212ENST00000486549 CLIC2O15247 247 aa16.03■□□□□ 0.16
USP4-212ENST00000486549 GLP2RO95838 553 aa16.03■□□□□ 0.16
USP4-212ENST00000486549 EFEMP2O95967 443 aa16.03■□□□□ 0.16
USP4-212ENST00000486549 SRGAP2BP0DMP2 458 aa16.03■□□□□ 0.16
USP4-212ENST00000486549 LTBRP36941 435 aa16.03■□□□□ 0.16
USP4-212ENST00000486549 GUCY2FP51841 1108 aa16.03■□□□□ 0.16
USP4-212ENST00000486549 PSMD2Q13200 908 aa16.03■□□□□ 0.16
USP4-212ENST00000486549 TMEM132DQ14C87 1099 aa16.03■□□□□ 0.16
USP4-212ENST00000486549 CTC1Q2NKJ3 1217 aa16.03■□□□□ 0.16
USP4-212ENST00000486549 USP41Q3LFD5 358 aa16.03■□□□□ 0.16
USP4-212ENST00000486549 FAM171A1Q5VUB5 890 aa16.03■□□□□ 0.16
USP4-212ENST00000486549 CRELD2Q6UXH1 353 aaPredicted RBP16.03■□□□□ 0.16
USP4-212ENST00000486549 CD302Q8IX05 232 aa16.03■□□□□ 0.16
USP4-212ENST00000486549 VN1R2Q8NFZ6 395 aa16.03■□□□□ 0.16
USP4-212ENST00000486549 RIN2Q8WYP3 895 aaPredicted RBP16.03■□□□□ 0.16
USP4-212ENST00000486549 DDX27Q96GQ7 796 aaKnown RBP16.03■□□□□ 0.16
USP4-212ENST00000486549 PRKAG3Q9UGI9 489 aa16.03■□□□□ 0.16
USP4-212ENST00000486549 NCOR1O75376 2440 aa16.03■□□□□ 0.16
USP4-212ENST00000486549 TCF20Q9UGU0 1960 aaKnown RBP16.02■□□□□ 0.16
USP4-212ENST00000486549 TMEM189-UBE2V1I3L0A0 370 aa16.02■□□□□ 0.16
USP4-212ENST00000486549 TGFB1I1O43294 461 aa16.02■□□□□ 0.16
USP4-212ENST00000486549 XPOTO43592 962 aaKnown RBP16.02■□□□□ 0.16
USP4-212ENST00000486549 EXTL3O43909 919 aa16.02■□□□□ 0.16
USP4-212ENST00000486549 CLASP2O75122 1294 aaKnown RBP16.02■□□□□ 0.16
USP4-212ENST00000486549 LDHAP00338 332 aaKnown RBP16.02■□□□□ 0.16
USP4-212ENST00000486549 BRCC3P46736 316 aa16.02■□□□□ 0.16
USP4-212ENST00000486549 DSG1Q02413 1049 aa16.02■□□□□ 0.16
USP4-212ENST00000486549 BMT2Q1RMZ1 405 aa16.02■□□□□ 0.16
USP4-212ENST00000486549 RTP2Q5QGT7 225 aa16.02■□□□□ 0.16
USP4-212ENST00000486549 PRSS55Q6UWB4 352 aaPredicted RBP16.02■□□□□ 0.16
USP4-212ENST00000486549 HS2ST1Q7LGA3 356 aa16.02■□□□□ 0.16
USP4-212ENST00000486549 GLYCTKQ8IVS8 523 aa16.02■□□□□ 0.16
USP4-212ENST00000486549 GPD1LQ8N335 351 aa16.02■□□□□ 0.16
USP4-212ENST00000486549 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.02■□□□□ 0.16
USP4-212ENST00000486549 IPO9Q96P70 1041 aaKnown RBP16.02■□□□□ 0.16
USP4-212ENST00000486549 POP1Q99575 1024 aaKnown RBP16.02■□□□□ 0.16
USP4-212ENST00000486549 EMILIN2Q9BXX0 1053 aa16.02■□□□□ 0.16
USP4-212ENST00000486549 AGPAT3Q9NRZ7 376 aa16.02■□□□□ 0.16
USP4-212ENST00000486549 RBAKQ9NYW8 714 aaPredicted RBP16.02■□□□□ 0.16
USP4-212ENST00000486549 HSPBP1Q9NZL4 362 aa16.02■□□□□ 0.16
USP4-212ENST00000486549 SSX2IPQ9Y2D8 614 aa16.02■□□□□ 0.16
USP4-212ENST00000486549 NUB1Q9Y5A7 615 aa16.02■□□□□ 0.16
USP4-212ENST00000486549 IRAK3Q9Y616 596 aa16.02■□□□□ 0.16
USP4-212ENST00000486549 PLXNA3P51805 1871 aa16.01■□□□□ 0.15
USP4-212ENST00000486549 KINO60870 393 aaKnown RBP16.01■□□□□ 0.15
USP4-212ENST00000486549 RHOBTB3O94955 611 aa16.01■□□□□ 0.15
USP4-212ENST00000486549 IL18RAPO95256 599 aa16.01■□□□□ 0.15
USP4-212ENST00000486549 ADRB2P07550 413 aa16.01■□□□□ 0.15
USP4-212ENST00000486549 CNPP09543 421 aaKnown RBP16.01■□□□□ 0.15
USP4-212ENST00000486549 KLRC2P26717 231 aa16.01■□□□□ 0.15
USP4-212ENST00000486549 RPL9P32969 192 aaKnown RBP16.01■□□□□ 0.15
USP4-212ENST00000486549 MCM4P33991 863 aa16.01■□□□□ 0.15
USP4-212ENST00000486549 CYP2J2P51589 502 aa16.01■□□□□ 0.15
USP4-212ENST00000486549 WNT7BP56706 349 aa16.01■□□□□ 0.15
USP4-212ENST00000486549 ELAVL2Q12926 359 aaKnown RBP16.01■□□□□ 0.15
USP4-212ENST00000486549 ZBTB6Q15916 424 aa16.01■□□□□ 0.15
USP4-212ENST00000486549 KNOP1Q1ED39 458 aaKnown RBP16.01■□□□□ 0.15
USP4-212ENST00000486549 KIAA0319Q5VV43 1072 aa16.01■□□□□ 0.15
USP4-212ENST00000486549 CD300LGQ6UXG3 332 aa16.01■□□□□ 0.15
USP4-212ENST00000486549 BRSK2Q8IWQ3 736 aa16.01■□□□□ 0.15
USP4-212ENST00000486549 BEST2Q8NFU1 509 aa16.01■□□□□ 0.15
USP4-212ENST00000486549 ERCC4Q92889 916 aaPredicted RBP16.01■□□□□ 0.15
USP4-212ENST00000486549 NECAB3Q96P71 396 aaPredicted RBP16.01■□□□□ 0.15
USP4-212ENST00000486549 KLHL5Q96PQ7 755 aa16.01■□□□□ 0.15
USP4-212ENST00000486549 TTPALQ9BTX7 342 aa16.01■□□□□ 0.15
USP4-212ENST00000486549 ASB7Q9H672 318 aa16.01■□□□□ 0.15
USP4-212ENST00000486549 CHST7Q9NS84 486 aa16.01■□□□□ 0.15
USP4-212ENST00000486549 CLEC1BQ9P126 229 aa16.01■□□□□ 0.15
USP4-212ENST00000486549 HCFC2Q9Y5Z7 792 aa16.01■□□□□ 0.15
USP4-212ENST00000486549 KIAA0391O15091 583 aaKnown RBP16■□□□□ 0.15
USP4-212ENST00000486549 TEX28O15482 410 aa16■□□□□ 0.15
USP4-212ENST00000486549 TRAPPC3O43617 180 aa16■□□□□ 0.15
USP4-212ENST00000486549 LILRB3O75022 631 aa16■□□□□ 0.15
USP4-212ENST00000486549 EPCAMP16422 314 aa16■□□□□ 0.15
USP4-212ENST00000486549 RPL17P18621 184 aaKnown RBP16■□□□□ 0.15
USP4-212ENST00000486549 CYP3A5P20815 502 aa16■□□□□ 0.15
USP4-212ENST00000486549 TKTP29401 623 aaKnown RBP16■□□□□ 0.15
USP4-212ENST00000486549 KCNB1Q14721 858 aa16■□□□□ 0.15
USP4-212ENST00000486549 SPATA1Q5VX52 437 aa16■□□□□ 0.15
USP4-212ENST00000486549 PDZRN4Q6ZMN7 1036 aaPredicted RBP16■□□□□ 0.15
USP4-212ENST00000486549 CBWD2Q8IUF1 395 aa16■□□□□ 0.15
USP4-212ENST00000486549 EFCAB13Q8IY85 973 aa16■□□□□ 0.15
USP4-212ENST00000486549 GJD3Q8N144 294 aa16■□□□□ 0.15
USP4-212ENST00000486549 TIGD1Q96MW7 591 aa16■□□□□ 0.15
USP4-212ENST00000486549 TSPAN18Q96SJ8 248 aa16■□□□□ 0.15
USP4-212ENST00000486549 APOL5Q9BWW9 433 aa16■□□□□ 0.15
USP4-212ENST00000486549 CD207Q9UJ71 328 aa16■□□□□ 0.15
USP4-212ENST00000486549 HOOK1Q9UJC3 728 aaKnown RBP16■□□□□ 0.15
USP4-212ENST00000486549 MAPK8IP1Q9UQF2 711 aa16■□□□□ 0.15
USP4-212ENST00000486549 DERAQ9Y315 318 aa16■□□□□ 0.15
USP4-212ENST00000486549 PPEF2O14830 753 aa15.99■□□□□ 0.15
USP4-212ENST00000486549 PRPF40AO75400 957 aaKnown RBP15.99■□□□□ 0.15
USP4-212ENST00000486549 ADH1AP07327 375 aa15.99■□□□□ 0.15
USP4-212ENST00000486549 LRPAP1P30533 357 aa15.99■□□□□ 0.15
USP4-212ENST00000486549 SSTR3P32745 418 aaPredicted RBP15.99■□□□□ 0.15
USP4-212ENST00000486549 TFAMQ00059 246 aaKnown RBP15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms