RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 PIRO00625 290 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 PHACTR2O75167 634 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 DGKIO75912 1065 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 ASS1P00966 412 aaKnown RBP8.9□□□□□ -0.98
SYNE1-225ENST00000481502 CCDC172P0C7W6 258 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 GCLMP48507 274 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 OSTNP61366 133 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 DLG4P78352 724 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 TFAMQ00059 246 aaKnown RBP8.9□□□□□ -0.98
SYNE1-225ENST00000481502 PLCB2Q00722 1185 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 MYL7Q01449 175 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 TUSC3Q13454 348 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 TRPC3Q13507 836 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 ARID5BQ14865 1188 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 NAB2Q15742 525 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 NOMO2Q5JPE7 1267 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 RASIP1Q5U651 963 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 TRIM65Q6PJ69 517 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 DEFB128Q7Z7B8 93 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 DRC7Q8IY82 874 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 EFCAB13Q8IY85 973 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 TMEM192Q8IY95 271 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 C7orf61Q8IZ16 206 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 ZNF397Q8NF99 534 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-225ENST00000481502 CXorf38Q8TB03 319 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 LINC01599Q8WXQ3 324 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 ZNF516Q92618 1163 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 SYN2Q92777 582 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-225ENST00000481502 BADQ92934 168 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 ZNF689Q96CS4 500 aaPredicted RBP8.9□□□□□ -0.98
SYNE1-225ENST00000481502 ZNF560Q96MR9 790 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 SLC9A7Q96T83 725 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 GAD1Q99259 594 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 TMEM175Q9BSA9 504 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 DNAI2Q9GZS0 605 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 DPP3Q9NY33 737 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 HES2Q9Y543 173 aa8.9□□□□□ -0.98
SYNE1-225ENST00000481502 TET1Q8NFU7 2136 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 PES1O00541 588 aaKnown RBP8.89□□□□□ -0.99
SYNE1-225ENST00000481502 PTGESO14684 152 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 MEFVO15553 781 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-225ENST00000481502 TEX33O43247 280 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 AP5Z1O43299 807 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 TRIM49P0CI25 452 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 TRIM49CP0CI26 452 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 TRIM21P19474 475 aaKnown RBP8.89□□□□□ -0.99
SYNE1-225ENST00000481502 AKAP5P24588 427 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 PON1P27169 355 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 MFAP3P55082 362 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 GSDMDP57764 484 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 WDR5P61964 334 aaKnown RBP8.89□□□□□ -0.99
SYNE1-225ENST00000481502 YWHAEP62258 255 aaKnown RBP8.89□□□□□ -0.99
SYNE1-225ENST00000481502 DSC1Q08554 894 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 CCDC173Q0VFZ6 552 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 KCNMA1Q12791 1236 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 BIRC3Q13489 604 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 NCOA4Q13772 614 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 SYCP1Q15431 976 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 CBWD6Q4V339 395 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 SEZ6Q53EL9 994 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 HSP90AA4PQ58FG1 418 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 CBWD3Q5JTY5 395 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 CBWD5Q5RIA9 395 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 TMEM240Q5SV17 173 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 TDRD10Q5VZ19 366 aaKnown RBP8.89□□□□□ -0.99
SYNE1-225ENST00000481502 DCLRE1AQ6PJP8 1040 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 ZNF365Q70YC5 407 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 C16orf59Q7L2K0 433 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 CNGA4Q8IV77 575 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 GPR65Q8IYL9 337 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 CMTR2Q8IYT2 770 aaKnown RBP8.89□□□□□ -0.99
SYNE1-225ENST00000481502 LRRC43Q8N309 656 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 C1orf127Q8N9H9 656 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 NEK11Q8NG66 645 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 OR5B17Q8NGF7 314 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 FAM212AQ96EL1 285 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 ZMAT2Q96NC0 199 aaKnown RBP8.89□□□□□ -0.99
SYNE1-225ENST00000481502 NT5C1BQ96P26 610 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 POP1Q99575 1024 aaKnown RBP8.89□□□□□ -0.99
SYNE1-225ENST00000481502 CYP3A43Q9HB55 503 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 GDAP2Q9NXN4 497 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 GCNT4Q9P109 453 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 CEP72Q9P209 647 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 APEX2Q9UBZ4 518 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 CAPN11Q9UMQ6 739 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 RALGAPA2Q2PPJ7 1873 aa8.89□□□□□ -0.99
SYNE1-225ENST00000481502 BRCA2P51587 3418 aa8.88□□□□□ -0.99
SYNE1-225ENST00000481502 TRAPPC3O43617 180 aa8.88□□□□□ -0.99
SYNE1-225ENST00000481502 GJB5O95377 273 aa8.88□□□□□ -0.99
SYNE1-225ENST00000481502 VNN1O95497 513 aa8.88□□□□□ -0.99
SYNE1-225ENST00000481502 CST3P01034 146 aaPredicted RBP8.88□□□□□ -0.99
SYNE1-225ENST00000481502 HLA-DRAP01903 254 aa8.88□□□□□ -0.99
SYNE1-225ENST00000481502 ALDH2P05091 517 aa8.88□□□□□ -0.99
SYNE1-225ENST00000481502 NFICP08651 508 aa8.88□□□□□ -0.99
SYNE1-225ENST00000481502 UCHL3P15374 230 aa8.88□□□□□ -0.99
SYNE1-225ENST00000481502 HNRNPH3P31942 346 aaKnown RBP8.88□□□□□ -0.99
SYNE1-225ENST00000481502 BMP8BP34820 402 aa8.88□□□□□ -0.99
SYNE1-225ENST00000481502 MLH1P40692 756 aa8.88□□□□□ -0.99
SYNE1-225ENST00000481502 AARSP49588 968 aaKnown RBP eCLIP8.88□□□□□ -0.99
SYNE1-225ENST00000481502 TAF6P49848 677 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms