RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 EIF3DO15371 548 aaKnown RBP eCLIP13.3□□□□□ -0.28
PTPRF-213ENST00000481019 TADA2AO75478 443 aa13.3□□□□□ -0.28
PTPRF-213ENST00000481019 CNPP09543 421 aaKnown RBP13.3□□□□□ -0.28
PTPRF-213ENST00000481019 EPCAMP16422 314 aa13.3□□□□□ -0.28
PTPRF-213ENST00000481019 RPL17P18621 184 aaKnown RBP13.3□□□□□ -0.28
PTPRF-213ENST00000481019 ABCD1P33897 745 aa13.3□□□□□ -0.28
PTPRF-213ENST00000481019 MRPS5P82675 430 aaKnown RBP13.3□□□□□ -0.28
PTPRF-213ENST00000481019 DSG1Q02413 1049 aa13.3□□□□□ -0.28
PTPRF-213ENST00000481019 PNOCQ13519 176 aa13.3□□□□□ -0.28
PTPRF-213ENST00000481019 ALCAMQ13740 583 aa13.3□□□□□ -0.28
PTPRF-213ENST00000481019 LEXMQ3ZCV2 418 aa13.3□□□□□ -0.28
PTPRF-213ENST00000481019 SLFN12LQ6IEE8 588 aa13.3□□□□□ -0.28
PTPRF-213ENST00000481019 PRSS55Q6UWB4 352 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-213ENST00000481019 EFCAB13Q8IY85 973 aa13.3□□□□□ -0.28
PTPRF-213ENST00000481019 SYCP3Q8IZU3 236 aa13.3□□□□□ -0.28
PTPRF-213ENST00000481019 SLC22A17Q8WUG5 538 aa13.3□□□□□ -0.28
PTPRF-213ENST00000481019 ERCC4Q92889 916 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-213ENST00000481019 KIF12Q96FN5 646 aa13.3□□□□□ -0.28
PTPRF-213ENST00000481019 NECAB3Q96P71 396 aaPredicted RBP13.3□□□□□ -0.28
PTPRF-213ENST00000481019 KLHL5Q96PQ7 755 aa13.3□□□□□ -0.28
PTPRF-213ENST00000481019 FAM213AQ9BRX8 229 aa13.3□□□□□ -0.28
PTPRF-213ENST00000481019 RPF1Q9H9Y2 349 aaKnown RBP13.3□□□□□ -0.28
PTPRF-213ENST00000481019 PLEKHA5Q9HAU0 1116 aa13.3□□□□□ -0.28
PTPRF-213ENST00000481019 EXOC7Q9UPT5 735 aa13.3□□□□□ -0.28
PTPRF-213ENST00000481019 IRAK3Q9Y616 596 aa13.3□□□□□ -0.28
PTPRF-213ENST00000481019 TMEM189-UBE2V1I3L0A0 370 aa13.29□□□□□ -0.28
PTPRF-213ENST00000481019 CLIC2O15247 247 aa13.29□□□□□ -0.28
PTPRF-213ENST00000481019 ADAM12O43184 909 aa13.29□□□□□ -0.28
PTPRF-213ENST00000481019 NR1I2O75469 434 aa13.29□□□□□ -0.28
PTPRF-213ENST00000481019 B3GAT3O94766 335 aa13.29□□□□□ -0.28
PTPRF-213ENST00000481019 RPN1P04843 607 aaKnown RBP13.29□□□□□ -0.28
PTPRF-213ENST00000481019 IL9P15248 144 aa13.29□□□□□ -0.28
PTPRF-213ENST00000481019 GLUD2P49448 558 aa13.29□□□□□ -0.28
PTPRF-213ENST00000481019 PPP2R3AQ06190 1150 aa13.29□□□□□ -0.28
PTPRF-213ENST00000481019 BMT2Q1RMZ1 405 aa13.29□□□□□ -0.28
PTPRF-213ENST00000481019 FAM171A1Q5VUB5 890 aa13.29□□□□□ -0.28
PTPRF-213ENST00000481019 DCLRE1AQ6PJP8 1040 aa13.29□□□□□ -0.28
PTPRF-213ENST00000481019 RIN2Q8WYP3 895 aaPredicted RBP13.29□□□□□ -0.28
PTPRF-213ENST00000481019 APOL5Q9BWW9 433 aa13.29□□□□□ -0.28
PTPRF-213ENST00000481019 NUP62CLQ9H1M0 184 aa13.29□□□□□ -0.28
PTPRF-213ENST00000481019 AGPAT3Q9NRZ7 376 aa13.29□□□□□ -0.28
PTPRF-213ENST00000481019 HCFC2Q9Y5Z7 792 aa13.29□□□□□ -0.28
PTPRF-213ENST00000481019 CARNS1A5YM72 827 aa13.28□□□□□ -0.28
PTPRF-213ENST00000481019 TEX28O15482 410 aa13.28□□□□□ -0.28
PTPRF-213ENST00000481019 URODP06132 367 aa13.28□□□□□ -0.28
PTPRF-213ENST00000481019 GARTP22102 1010 aa13.28□□□□□ -0.28
PTPRF-213ENST00000481019 TKTP29401 623 aaKnown RBP13.28□□□□□ -0.28
PTPRF-213ENST00000481019 NDUFV1P49821 464 aa13.28□□□□□ -0.28
PTPRF-213ENST00000481019 USP41Q3LFD5 358 aa13.28□□□□□ -0.28
PTPRF-213ENST00000481019 TJAP1Q5JTD0 557 aa13.28□□□□□ -0.28
PTPRF-213ENST00000481019 SYCE2Q6PIF2 218 aa13.28□□□□□ -0.28
PTPRF-213ENST00000481019 RSPO2Q6UXX9 243 aaPredicted RBP13.28□□□□□ -0.28
PTPRF-213ENST00000481019 CEP57Q86XR8 500 aa13.28□□□□□ -0.28
PTPRF-213ENST00000481019 CBWD2Q8IUF1 395 aa13.28□□□□□ -0.28
PTPRF-213ENST00000481019 GLYCTKQ8IVS8 523 aa13.28□□□□□ -0.28
PTPRF-213ENST00000481019 C12orf76Q8N812 135 aaPredicted RBP13.28□□□□□ -0.28
PTPRF-213ENST00000481019 LNX1Q8TBB1 728 aaPredicted RBP13.28□□□□□ -0.28
PTPRF-213ENST00000481019 UROC1Q96N76 676 aa13.28□□□□□ -0.28
PTPRF-213ENST00000481019 COL25A1Q9BXS0 654 aaPredicted RBP13.28□□□□□ -0.28
PTPRF-213ENST00000481019 TMEM206Q9H813 350 aa13.28□□□□□ -0.28
PTPRF-213ENST00000481019 RXFP1Q9HBX9 757 aa13.28□□□□□ -0.28
PTPRF-213ENST00000481019 MRPL17Q9NRX2 175 aaKnown RBP13.28□□□□□ -0.28
PTPRF-213ENST00000481019 EXOC1Q9NV70 894 aa13.28□□□□□ -0.28
PTPRF-213ENST00000481019 SLC38A7Q9NVC3 462 aa13.28□□□□□ -0.28
PTPRF-213ENST00000481019 HSPBP1Q9NZL4 362 aa13.28□□□□□ -0.28
PTPRF-213ENST00000481019 SF3B1O75533 1304 aaKnown RBP eCLIP13.28□□□□□ -0.281e-7■■■■■ 172.3
PTPRF-213ENST00000481019 PTPRJQ12913 1337 aa13.28□□□□□ -0.28
PTPRF-213ENST00000481019 SPTLC1O15269 473 aa13.27□□□□□ -0.29
PTPRF-213ENST00000481019 NCK2O43639 380 aa13.27□□□□□ -0.29
PTPRF-213ENST00000481019 EXTL3O43909 919 aa13.27□□□□□ -0.29
PTPRF-213ENST00000481019 SPATA31D3P0C874 917 aa13.27□□□□□ -0.29
PTPRF-213ENST00000481019 FGFR3P22607 806 aa13.27□□□□□ -0.29
PTPRF-213ENST00000481019 LRPAP1P30533 357 aa13.27□□□□□ -0.29
PTPRF-213ENST00000481019 CLCN4P51793 760 aa13.27□□□□□ -0.29
PTPRF-213ENST00000481019 POSTNQ15063 836 aa13.27□□□□□ -0.29
PTPRF-213ENST00000481019 KYAT1Q16773 422 aa13.27□□□□□ -0.29
PTPRF-213ENST00000481019 SPATA1Q5VX52 437 aa13.27□□□□□ -0.29
PTPRF-213ENST00000481019 LMBRD2Q68DH5 695 aaPredicted RBP13.27□□□□□ -0.29
PTPRF-213ENST00000481019 ANKRD54Q6NXT1 300 aa13.27□□□□□ -0.29
PTPRF-213ENST00000481019 ARMCX5Q6P1M9 558 aa13.27□□□□□ -0.29
PTPRF-213ENST00000481019 TMEM184AQ6ZMB5 413 aa13.27□□□□□ -0.29
PTPRF-213ENST00000481019 SPATA31D4Q6ZUB0 917 aa13.27□□□□□ -0.29
PTPRF-213ENST00000481019 BRSK2Q8IWQ3 736 aa13.27□□□□□ -0.29
PTPRF-213ENST00000481019 NOC3LQ8WTT2 800 aaKnown RBP13.27□□□□□ -0.29
PTPRF-213ENST00000481019 PPP2R3CQ969Q6 453 aa13.27□□□□□ -0.29
PTPRF-213ENST00000481019 CDCA3Q99618 268 aaPredicted RBP13.27□□□□□ -0.29
PTPRF-213ENST00000481019 CLSTN3Q9BQT9 956 aa13.27□□□□□ -0.29
PTPRF-213ENST00000481019 GZF1Q9H116 711 aaPredicted RBP13.27□□□□□ -0.29
PTPRF-213ENST00000481019 S1PR5Q9H228 398 aa13.27□□□□□ -0.29
PTPRF-213ENST00000481019 KCTD10Q9H3F6 313 aa13.27□□□□□ -0.29
PTPRF-213ENST00000481019 PDE11AQ9HCR9 933 aa13.27□□□□□ -0.29
PTPRF-213ENST00000481019 UBE4BO95155 1302 aa13.27□□□□□ -0.29
PTPRF-213ENST00000481019 MBTPS2O43462 519 aa13.26□□□□□ -0.29
PTPRF-213ENST00000481019 RHOBTB3O94955 611 aa13.26□□□□□ -0.29
PTPRF-213ENST00000481019 MYL1P05976 194 aa13.26□□□□□ -0.29
PTPRF-213ENST00000481019 WEE2P0C1S8 567 aa13.26□□□□□ -0.29
PTPRF-213ENST00000481019 RPL9P32969 192 aaKnown RBP13.26□□□□□ -0.29
PTPRF-213ENST00000481019 SCN1AP35498 2009 aa13.26□□□□□ -0.29
PTPRF-213ENST00000481019 CYP2J2P51589 502 aa13.26□□□□□ -0.29
PTPRF-213ENST00000481019 TMEM132DQ14C87 1099 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms