RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-222	ENST00000478095	EXTL3	O43909	919 aa		11.15	□□□□□ -0.62
HDAC6-222	ENST00000478095	FOXK1	P85037	733 aa		11.15	□□□□□ -0.62
HDAC6-222	ENST00000478095	HYAL1	Q12794	435 aa		11.15	□□□□□ -0.62
HDAC6-222	ENST00000478095	SMC1A	Q14683	1233 aa	Known RBP	11.15	□□□□□ -0.62
HDAC6-222	ENST00000478095	TMEM132D	Q14C87	1099 aa		11.15	□□□□□ -0.62
HDAC6-222	ENST00000478095	CAMK4	Q16566	473 aa		11.15	□□□□□ -0.62
HDAC6-222	ENST00000478095	UPP1	Q16831	310 aa		11.15	□□□□□ -0.62
HDAC6-222	ENST00000478095	FUT10	Q6P4F1	479 aa		11.15	□□□□□ -0.62
HDAC6-222	ENST00000478095	EP400NL	Q6ZTU2	488 aa		11.15	□□□□□ -0.62
HDAC6-222	ENST00000478095	BRSK2	Q8IWQ3	736 aa		11.15	□□□□□ -0.62
HDAC6-222	ENST00000478095	PLPP6	Q8IY26	295 aa		11.15	□□□□□ -0.62
HDAC6-222	ENST00000478095	GPD1L	Q8N335	351 aa		11.15	□□□□□ -0.62
HDAC6-222	ENST00000478095	RDH13	Q8NBN7	331 aa		11.15	□□□□□ -0.62
HDAC6-222	ENST00000478095	HERC2P3	Q9BVR0	1158 aa		11.15	□□□□□ -0.62
HDAC6-222	ENST00000478095	KCTD10	Q9H3F6	313 aa		11.15	□□□□□ -0.62
HDAC6-222	ENST00000478095	LMBRD1	Q9NUN5	540 aa		11.15	□□□□□ -0.62
HDAC6-222	ENST00000478095	RMND1	Q9NWS8	449 aa		11.15	□□□□□ -0.62
HDAC6-222	ENST00000478095	UBQLN1	Q9UMX0	589 aa	Known RBP	11.15	□□□□□ -0.62
HDAC6-222	ENST00000478095	COL6A3	P12111	3177 aa		11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	SF3B1	O75533	1304 aa	Known RBP eCLIP	11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	TCHH	Q07283	1943 aa		11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	BIN1	O00499	593 aa		11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	LINC01565	O15544	149 aa		11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	CXCL14	O95715	111 aa		11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	LDHA	P00338	332 aa	Known RBP	11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	SOD2	P04179	222 aa		11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	UROD	P06132	367 aa		11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	ADRB2	P07550	413 aa		11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	CTSA	P10619	480 aa		11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	BRCC3	P46736	316 aa		11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	RBM10	P98175	930 aa	Known RBP	11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	PTPN14	Q15678	1187 aa		11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	ZBTB6	Q15916	424 aa		11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	LMBRD2	Q68DH5	695 aa	Predicted RBP	11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	DCLRE1A	Q6PJP8	1040 aa		11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	CD300LG	Q6UXG3	332 aa		11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	CD302	Q8IX05	232 aa		11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	EFCAB13	Q8IY85	973 aa		11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	RNF168	Q8IYW5	571 aa	Predicted RBP	11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	BEST2	Q8NFU1	509 aa		11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	SPATA20	Q8TB22	786 aa		11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	UROC1	Q96N76	676 aa		11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	GSDMA	Q96QA5	445 aa		11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	ASB7	Q9H672	318 aa		11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	TLE6	Q9H808	572 aa		11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	PDE11A	Q9HCR9	933 aa		11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	NGRN	Q9NPE2	291 aa	Known RBP	11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	MAN1B1	Q9UKM7	699 aa		11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	KIAA1671	Q9BY89	1806 aa		11.14	□□□□□ -0.63
HDAC6-222	ENST00000478095	RALGAPA2	Q2PPJ7	1873 aa		11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	C2orf71	A6NGG8	1288 aa		11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	ZNF233	A6NK53	670 aa		11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	PPEF2	O14830	753 aa		11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	KIAA0391	O15091	583 aa	Known RBP	11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	EXOC3	O60645	756 aa		11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	KIF20A	O95235	890 aa		11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	IL18RAP	O95256	599 aa		11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	EFEMP2	O95967	443 aa		11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	NR3C1	P04150	777 aa		11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	MCM4	P33991	863 aa		11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	GLUD2	P49448	558 aa		11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	SNRPF	P62306	86 aa	Known RBP	11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	TFAM	Q00059	246 aa	Known RBP	11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	DSG2	Q14126	1118 aa		11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	SNRNP35	Q16560	246 aa	Known RBP	11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	ARSI	Q5FYB1	569 aa		11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	RTP2	Q5QGT7	225 aa		11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	ZNF658	Q5TYW1	1059 aa	Predicted RBP	11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	FAM171A1	Q5VUB5	890 aa		11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	SPATA1	Q5VX52	437 aa		11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	PDE12	Q6L8Q7	609 aa	Known RBP	11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	KIAA1841	Q6NSI8	718 aa		11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	LLGL2	Q6P1M3	1020 aa		11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	CEP57	Q86XR8	500 aa		11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	ELOA2	Q8IYF1	753 aa	Predicted RBP	11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	GUF1	Q8N442	669 aa	Known RBP	11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	MRPL43	Q8N983	215 aa	Known RBP	11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	XXYLT1	Q8NBI6	393 aa		11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	GOLGA5	Q8TBA6	731 aa		11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	PPP2R3C	Q969Q6	453 aa		11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	DDX27	Q96GQ7	796 aa	Known RBP	11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	MRPL17	Q9NRX2	175 aa	Known RBP	11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	CLDND1	Q9NY35	253 aa		11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	NUB1	Q9Y5A7	615 aa		11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	MYH11	P35749	1972 aa		11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	PRRC2B	Q5JSZ5	2229 aa	Known RBP	11.13	□□□□□ -0.63
HDAC6-222	ENST00000478095	GOLGA6L22	H0YM25	854 aa		11.12	□□□□□ -0.63
HDAC6-222	ENST00000478095	TMEM189-UBE2V1	I3L0A0	370 aa		11.12	□□□□□ -0.63
HDAC6-222	ENST00000478095	PDXK	O00764	312 aa		11.12	□□□□□ -0.63
HDAC6-222	ENST00000478095	XPOT	O43592	962 aa	Known RBP	11.12	□□□□□ -0.63
HDAC6-222	ENST00000478095	CALU	O43852	315 aa	Predicted RBP	11.12	□□□□□ -0.63
HDAC6-222	ENST00000478095	DLAT	P10515	647 aa	Known RBP	11.12	□□□□□ -0.63
HDAC6-222	ENST00000478095	RPL17	P18621	184 aa	Known RBP	11.12	□□□□□ -0.63
HDAC6-222	ENST00000478095	CYP3A5	P20815	502 aa		11.12	□□□□□ -0.63
HDAC6-222	ENST00000478095	TKT	P29401	623 aa	Known RBP	11.12	□□□□□ -0.63
HDAC6-222	ENST00000478095	LRPAP1	P30533	357 aa		11.12	□□□□□ -0.63
HDAC6-222	ENST00000478095	RPL9	P32969	192 aa	Known RBP	11.12	□□□□□ -0.63
HDAC6-222	ENST00000478095	PRCP	P42785	496 aa		11.12	□□□□□ -0.63
HDAC6-222	ENST00000478095	CASP4	P49662	377 aa		11.12	□□□□□ -0.63
HDAC6-222	ENST00000478095	POU5F1	Q01860	360 aa	Known RBP	11.12	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms