RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 ERICH1Q86X53 443 aa11.35□□□□□ -0.59
CHD3-208ENST00000470531 CD302Q8IX05 232 aa11.35□□□□□ -0.59
CHD3-208ENST00000470531 SLC25A41Q8N5S1 370 aa11.35□□□□□ -0.59
CHD3-208ENST00000470531 ZBTB45Q96K62 511 aaPredicted RBP11.35□□□□□ -0.59
CHD3-208ENST00000470531 MSTO1Q9BUK6 570 aa11.35□□□□□ -0.59
CHD3-208ENST00000470531 WDR18Q9BV38 432 aa11.35□□□□□ -0.59
CHD3-208ENST00000470531 CARD9Q9H257 536 aa11.35□□□□□ -0.59
CHD3-208ENST00000470531 CHCHD3Q9NX63 227 aaKnown RBP11.35□□□□□ -0.59
CHD3-208ENST00000470531 ZHX2Q9Y6X8 837 aa11.35□□□□□ -0.59
CHD3-208ENST00000470531 DISP2A7MBM2 1401 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 MIF4GDA9UHW6 222 aaKnown RBP11.34□□□□□ -0.59
CHD3-208ENST00000470531 hCG_1984214I3L0E3 225 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 LCA5LO95447 670 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 TMEM191BP0C7N4 346 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 GYS1P13807 737 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 PTENP60484 403 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 IFRD2Q12894 506 aaPredicted RBP11.34□□□□□ -0.59
CHD3-208ENST00000470531 SGSM1Q2NKQ1 1148 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 MREGQ8N565 214 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 ZNF713Q8N859 430 aaPredicted RBP11.34□□□□□ -0.59
CHD3-208ENST00000470531 PARD3BQ8TEW8 1205 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 CCT6BQ92526 530 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 TAAR1Q96RJ0 339 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 TMEM206Q9H813 350 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 DNAJC18Q9H819 358 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 NEU2Q9Y3R4 380 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 ESYT2A0FGR8 921 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 M0R2N6 131 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 NOP56O00567 594 aaKnown RBP11.34□□□□□ -0.59
CHD3-208ENST00000470531 GYG2O15488 501 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 RIPK2O43353 540 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 PPFIA2O75334 1257 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 STAM2O75886 525 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 ESRRAP11474 423 aaPredicted RBP11.34□□□□□ -0.59
CHD3-208ENST00000470531 KRT4P19013 534 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 SSTR1P30872 391 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 PPP2R5EQ16537 467 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 TSNAXIP1Q2TAA8 658 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 WLSQ5T9L3 541 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 CAPRIN2Q6IMN6 1127 aaKnown RBP11.34□□□□□ -0.59
CHD3-208ENST00000470531 DARS2Q6PI48 645 aaKnown RBP11.34□□□□□ -0.59
CHD3-208ENST00000470531 MYLK4Q86YV6 388 aaPredicted RBP11.34□□□□□ -0.59
CHD3-208ENST00000470531 KCTD6Q8NC69 237 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 IL31RAQ8NI17 732 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 SCFD2Q8WU76 684 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 TARS2Q9BW92 718 aaKnown RBP11.34□□□□□ -0.59
CHD3-208ENST00000470531 OSBPL8Q9BZF1 889 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 A1CFQ9NQ94 594 aaKnown RBP11.34□□□□□ -0.59
CHD3-208ENST00000470531 ARMCX1Q9P291 453 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 ZFP69BQ9UJL9 534 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 AGAP1Q9UPQ3 857 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 NAALADL1Q9UQQ1 740 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 KCPQ6ZWJ8 1503 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 FER1L4A9Z1Z3 1794 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 CYP11B1P15538 503 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 SERPINB6P35237 376 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 SOX11P35716 441 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 NRLP54845 237 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 DRP2Q13474 957 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 CLUL1Q15846 466 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 APOBEC3HQ6NTF7 200 aaKnown RBP11.34□□□□□ -0.59
CHD3-208ENST00000470531 LRIG3Q6UXM1 1119 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 KLHL23Q8NBE8 558 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 SNF8Q96H20 258 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 FAM161BQ96MY7 647 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 TRIM4Q9C037 500 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 ZCWPW1Q9H0M4 648 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 LRRC4BQ9NT99 713 aa11.34□□□□□ -0.59
CHD3-208ENST00000470531 R3HDM2Q9Y2K5 976 aaKnown RBP11.34□□□□□ -0.59
CHD3-208ENST00000470531 NUP188Q5SRE5 1749 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 KIAA0391O15091 583 aaKnown RBP11.33□□□□□ -0.6
CHD3-208ENST00000470531 SNUPNO95149 360 aaKnown RBP11.33□□□□□ -0.6
CHD3-208ENST00000470531 ZCCHC18P0CG32 403 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 PSMA2P25787 234 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 BAATQ14032 418 aaPredicted RBP11.33□□□□□ -0.6
CHD3-208ENST00000470531 DHX34Q14147 1143 aaKnown RBP11.33□□□□□ -0.6
CHD3-208ENST00000470531 SDCCAG8Q86SQ7 713 aaPredicted RBP11.33□□□□□ -0.6
CHD3-208ENST00000470531 GRK7Q8WTQ7 553 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 RUBCNQ92622 972 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 SYN2Q92777 582 aaPredicted RBP11.33□□□□□ -0.6
CHD3-208ENST00000470531 PCDHB18PQ96TA0 734 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 KDM4CQ9H3R0 1056 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.33□□□□□ -0.6
CHD3-208ENST00000470531 LOC100653049A0A140TA62 436 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 FAM187AA6NFU0 413 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 KRT34O76011 436 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 AGTP01019 485 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 P4HBP07237 508 aaKnown RBP11.33□□□□□ -0.6
CHD3-208ENST00000470531 KRT16P08779 473 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 FGRP09769 529 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 UBTFL6P0CB48 400 aaPredicted RBP11.33□□□□□ -0.6
CHD3-208ENST00000470531 ATP2A2P16615 1042 aaKnown RBP11.33□□□□□ -0.6
CHD3-208ENST00000470531 ADRA2BP18089 450 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 TM4SF1P30408 202 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 MAGEA4P43358 317 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 KRT81Q14533 505 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 PLCB4Q15147 1175 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 LVRNQ6Q4G3 990 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 EXOC3L1Q86VI1 746 aa11.33□□□□□ -0.6
CHD3-208ENST00000470531 ZNF354CQ86Y25 554 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms