RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 RPS9P46781 194 aaKnown RBP13.08□□□□□ -0.32
SQSTM1-206ENST00000466342 NRLP54845 237 aa13.08□□□□□ -0.32
SQSTM1-206ENST00000466342 MCM6Q14566 821 aa13.08□□□□□ -0.32
SQSTM1-206ENST00000466342 CSRP2Q16527 193 aa13.08□□□□□ -0.32
SQSTM1-206ENST00000466342 ADALQ6DHV7 355 aa13.08□□□□□ -0.32
SQSTM1-206ENST00000466342 PRR23CQ6ZRP0 262 aa13.08□□□□□ -0.32
SQSTM1-206ENST00000466342 GET4Q7L5D6 327 aaPredicted RBP13.08□□□□□ -0.32
SQSTM1-206ENST00000466342 PDILTQ8N807 584 aa13.08□□□□□ -0.32
SQSTM1-206ENST00000466342 LPPQ93052 612 aa13.08□□□□□ -0.32
SQSTM1-206ENST00000466342 RPS6KC1Q96S38 1066 aa13.08□□□□□ -0.32
SQSTM1-206ENST00000466342 NFKBIZQ9BYH8 718 aa13.08□□□□□ -0.32
SQSTM1-206ENST00000466342 GBP3Q9H0R5 595 aa13.08□□□□□ -0.32
SQSTM1-206ENST00000466342 UBN1Q9NPG3 1134 aa13.08□□□□□ -0.32
SQSTM1-206ENST00000466342 PRMT8Q9NR22 394 aaPredicted RBP13.08□□□□□ -0.32
SQSTM1-206ENST00000466342 FAM13BQ9NYF5 915 aa13.08□□□□□ -0.32
SQSTM1-206ENST00000466342 KANSL3Q9P2N6 904 aa13.08□□□□□ -0.32
SQSTM1-206ENST00000466342 C2CD2LO14523 706 aa13.07□□□□□ -0.32
SQSTM1-206ENST00000466342 TEX28O15482 410 aa13.07□□□□□ -0.32
SQSTM1-206ENST00000466342 GDF9O60383 454 aa13.07□□□□□ -0.32
SQSTM1-206ENST00000466342 FOXD2O60548 495 aaPredicted RBP13.07□□□□□ -0.32
SQSTM1-206ENST00000466342 HIP1RO75146 1068 aa13.07□□□□□ -0.32
SQSTM1-206ENST00000466342 GLUD1P00367 558 aa13.07□□□□□ -0.32
SQSTM1-206ENST00000466342 MYBP10242 640 aa13.07□□□□□ -0.32
SQSTM1-206ENST00000466342 PFKPQ01813 784 aa13.07□□□□□ -0.32
SQSTM1-206ENST00000466342 CAPSQ13938 189 aa13.07□□□□□ -0.32
SQSTM1-206ENST00000466342 LPAL2Q16609 132 aa13.07□□□□□ -0.32
SQSTM1-206ENST00000466342 UBXN11Q5T124 520 aa13.07□□□□□ -0.32
SQSTM1-206ENST00000466342 PARM1Q6UWI2 310 aa13.07□□□□□ -0.32
SQSTM1-206ENST00000466342 AGMOQ6ZNB7 445 aa13.07□□□□□ -0.32
SQSTM1-206ENST00000466342 GPBP1Q86WP2 473 aa13.07□□□□□ -0.32
SQSTM1-206ENST00000466342 ZNF280BQ86YH2 543 aa13.07□□□□□ -0.32
SQSTM1-206ENST00000466342 KIFAP3Q92845 792 aa13.07□□□□□ -0.32
SQSTM1-206ENST00000466342 CCDC51Q96ER9 411 aa13.07□□□□□ -0.32
SQSTM1-206ENST00000466342 DRC1Q96MC2 740 aa13.07□□□□□ -0.32
SQSTM1-206ENST00000466342 PANK2Q9BZ23 570 aa13.07□□□□□ -0.32
SQSTM1-206ENST00000466342 PLEKHA4Q9H4M7 779 aa13.07□□□□□ -0.32
SQSTM1-206ENST00000466342 CNTNAP2Q9UHC6 1331 aa13.07□□□□□ -0.32
SQSTM1-206ENST00000466342 A0A1W2PQ27 194 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 A0A1W2PQ64 194 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 A0A1W2PQD8 194 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 SOBPA7XYQ1 873 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 MEIS3P2A8K0S8 358 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 INO80B-WBP1J3KQ70 363 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 TSPAN1O60635 241 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 C1RP00736 705 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 SOD2P04179 222 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 URODP06132 367 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 SPATA31D3P0C874 917 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 CMA1P23946 247 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 TARSP26639 723 aaKnown RBP13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 MAPK7Q13164 816 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 FZD5Q13467 585 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 DHX8Q14562 1220 aaKnown RBP13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 PPP2R5AQ15172 486 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 E2F4Q16254 413 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 LONRF3Q496Y0 759 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 ARSHQ5FYA8 562 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 IL31Q6EBC2 164 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 NOTUMQ6P988 496 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 SPATA31D4Q6ZUB0 917 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 URGCPQ8TCY9 931 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 PYM1Q9BRP8 204 aaKnown RBP13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 PRKD2Q9BZL6 878 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 CUEDC2Q9H467 287 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 RSAD1Q9HA92 442 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 RXFP1Q9HBX9 757 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 ZDHHC7Q9NXF8 308 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 ODF2LQ9ULJ1 636 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 ZMIZ1Q9ULJ6 1067 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 INPP5FQ9Y2H2 1132 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 FAN1Q9Y2M0 1017 aa13.06□□□□□ -0.32
SQSTM1-206ENST00000466342 LRRIQ4A6NIV6 560 aa13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 TM4SF5O14894 197 aa13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 POLR2DO15514 142 aaKnown RBP13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 B4GALT3O60512 393 aa13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 DDHD2O94830 711 aa13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 TDGF1P13385 188 aa13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 ITGA4P13612 1032 aa13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 PFKFB1P16118 471 aa13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 NAMPTP43490 491 aa13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 MBTD1Q05BQ5 628 aa13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 RAD51AP2Q09MP3 1159 aa13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 MTAPQ13126 283 aa13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 CDCA2Q69YH5 1023 aaPredicted RBP13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 MAMSTRQ6ZN01 415 aa13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 MTSS1LQ765P7 747 aa13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 SV2BQ7L1I2 683 aa13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 DAW1Q8N136 415 aa13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 IQUBQ8NA54 791 aa13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 BSNDQ8WZ55 320 aa13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 DHX58Q96C10 678 aa13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 IFT74Q96LB3 600 aa13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 REEP2Q9BRK0 252 aa13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 TMEM175Q9BSA9 504 aa13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 C17orf75Q9HAS0 396 aa13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 MAGEF1Q9HAY2 307 aa13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 KCNH3Q9ULD8 1083 aa13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 HPSEQ9Y251 543 aa13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 TDRD15B5MCY1 1934 aaKnown RBP13.05□□□□□ -0.32
SQSTM1-206ENST00000466342 NPHP3-ACAD11A0A0J9YXS1 232 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms