RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 ZNF662Q6ZS27 426 aa12.78□□□□□ -0.36
USP54-209ENST00000464635 CREBRFQ8IUR6 639 aa12.78□□□□□ -0.36
USP54-209ENST00000464635 FAM186BQ8IYM0 893 aa12.78□□□□□ -0.36
USP54-209ENST00000464635 CCDC170Q8IYT3 715 aa12.78□□□□□ -0.36
USP54-209ENST00000464635 TMC2Q8TDI7 906 aa12.78□□□□□ -0.36
USP54-209ENST00000464635 SLC35C1Q96A29 364 aa12.78□□□□□ -0.36
USP54-209ENST00000464635 SCLT1Q96NL6 688 aa12.78□□□□□ -0.36
USP54-209ENST00000464635 POLR3FQ9H1D9 316 aaPredicted RBP12.78□□□□□ -0.36
USP54-209ENST00000464635 IGFLR1Q9H665 355 aa12.78□□□□□ -0.36
USP54-209ENST00000464635 TMEM161AQ9NX61 479 aa12.78□□□□□ -0.36
USP54-209ENST00000464635 CEP72Q9P209 647 aa12.78□□□□□ -0.36
USP54-209ENST00000464635 PYCARDQ9ULZ3 195 aa12.78□□□□□ -0.36
USP54-209ENST00000464635 CCDC169A6NNP5 214 aa12.77□□□□□ -0.37
USP54-209ENST00000464635 SLC16A4O15374 487 aa12.77□□□□□ -0.37
USP54-209ENST00000464635 KRT13P13646 458 aa12.77□□□□□ -0.37
USP54-209ENST00000464635 GLRA2P23416 452 aa12.77□□□□□ -0.37
USP54-209ENST00000464635 ANXA13P27216 316 aa12.77□□□□□ -0.37
USP54-209ENST00000464635 KCNMA1Q12791 1236 aa12.77□□□□□ -0.37
USP54-209ENST00000464635 CETN1Q12798 172 aa12.77□□□□□ -0.37
USP54-209ENST00000464635 STRN3Q13033 797 aa12.77□□□□□ -0.37
USP54-209ENST00000464635 TFDP1Q14186 410 aa12.77□□□□□ -0.37
USP54-209ENST00000464635 PCBP1Q15365 356 aaKnown RBP eCLIP12.77□□□□□ -0.37
USP54-209ENST00000464635 SPOUT1Q5T280 376 aaKnown RBP12.77□□□□□ -0.37
USP54-209ENST00000464635 CCAR2Q8N163 923 aaKnown RBP12.77□□□□□ -0.37
USP54-209ENST00000464635 POF1BQ8WVV4 589 aa12.77□□□□□ -0.37
USP54-209ENST00000464635 PSPC1Q8WXF1 523 aaKnown RBP12.77□□□□□ -0.37
USP54-209ENST00000464635 CWH43Q9H720 699 aa12.77□□□□□ -0.37
USP54-209ENST00000464635 GPRC5CQ9NQ84 441 aa12.77□□□□□ -0.37
USP54-209ENST00000464635 RRAGDQ9NQL2 400 aaPredicted RBP12.77□□□□□ -0.37
USP54-209ENST00000464635 ZNHIT6Q9NWK9 470 aaKnown RBP12.77□□□□□ -0.37
USP54-209ENST00000464635 K7ERI5 159 aa12.76□□□□□ -0.37
USP54-209ENST00000464635 EXOC3O60645 756 aa12.76□□□□□ -0.37
USP54-209ENST00000464635 OFD1O75665 1012 aa12.76□□□□□ -0.37
USP54-209ENST00000464635 ATF7P17544 494 aaPredicted RBP12.76□□□□□ -0.37
USP54-209ENST00000464635 COL9A1P20849 921 aa12.76□□□□□ -0.37
USP54-209ENST00000464635 PBX3P40426 434 aa12.76□□□□□ -0.37
USP54-209ENST00000464635 ADKP55263 362 aaKnown RBP12.76□□□□□ -0.37
USP54-209ENST00000464635 CLDN10P78369 228 aa12.76□□□□□ -0.37
USP54-209ENST00000464635 BFSP1Q12934 665 aa12.76□□□□□ -0.37
USP54-209ENST00000464635 FAM187BQ17R55 369 aa12.76□□□□□ -0.37
USP54-209ENST00000464635 CEP135Q66GS9 1140 aa12.76□□□□□ -0.37
USP54-209ENST00000464635 GBP6Q6ZN66 633 aa12.76□□□□□ -0.37
USP54-209ENST00000464635 MAEAQ7L5Y9 396 aa12.76□□□□□ -0.37
USP54-209ENST00000464635 ECHDC2Q86YB7 292 aa12.76□□□□□ -0.37
USP54-209ENST00000464635 KSR1Q8IVT5 923 aa12.76□□□□□ -0.37
USP54-209ENST00000464635 COLGALT1Q8NBJ5 622 aa12.76□□□□□ -0.37
USP54-209ENST00000464635 NEK11Q8NG66 645 aa12.76□□□□□ -0.37
USP54-209ENST00000464635 DEPTORQ8TB45 409 aa12.76□□□□□ -0.37
USP54-209ENST00000464635 NLRP7Q8WX94 980 aa12.76□□□□□ -0.37
USP54-209ENST00000464635 BSNDQ8WZ55 320 aa12.76□□□□□ -0.37
USP54-209ENST00000464635 FAM81BQ96LP2 452 aa12.76□□□□□ -0.37
USP54-209ENST00000464635 MFSD14AQ96MC6 490 aa12.76□□□□□ -0.37
USP54-209ENST00000464635 CASD1Q96PB1 797 aa12.76□□□□□ -0.37
USP54-209ENST00000464635 ELAC1Q9H777 363 aaKnown RBP12.76□□□□□ -0.37
USP54-209ENST00000464635 HSPBP1Q9NZL4 362 aa12.76□□□□□ -0.37
USP54-209ENST00000464635 A0A087WZ62 844 aa12.75□□□□□ -0.37
USP54-209ENST00000464635 SSU72P8A0A1W2PR75 194 aa12.75□□□□□ -0.37
USP54-209ENST00000464635 PES1O00541 588 aaKnown RBP12.75□□□□□ -0.37
USP54-209ENST00000464635 CLIC2O15247 247 aa12.75□□□□□ -0.37
USP54-209ENST00000464635 FGF18O76093 207 aa12.75□□□□□ -0.37
USP54-209ENST00000464635 GLP2RO95838 553 aa12.75□□□□□ -0.37
USP54-209ENST00000464635 ADSSP30520 456 aa12.75□□□□□ -0.37
USP54-209ENST00000464635 CASP4P49662 377 aa12.75□□□□□ -0.37
USP54-209ENST00000464635 TERF1P54274 439 aa12.75□□□□□ -0.37
USP54-209ENST00000464635 RBM10P98175 930 aaKnown RBP12.75□□□□□ -0.37
USP54-209ENST00000464635 EXOC3L4Q17RC7 722 aa12.75□□□□□ -0.37
USP54-209ENST00000464635 CLLU1OSQ5K130 101 aa12.75□□□□□ -0.37
USP54-209ENST00000464635 E4F1Q66K89 784 aaPredicted RBP12.75□□□□□ -0.37
USP54-209ENST00000464635 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.75□□□□□ -0.37
USP54-209ENST00000464635 ZNF598Q86UK7 904 aaKnown RBP12.75□□□□□ -0.37
USP54-209ENST00000464635 ZBTB8OSQ8IWT0 167 aa12.75□□□□□ -0.37
USP54-209ENST00000464635 RNF169Q8NCN4 708 aa12.75□□□□□ -0.37
USP54-209ENST00000464635 FDXACB1Q9BRP7 624 aaPredicted RBP12.75□□□□□ -0.37
USP54-209ENST00000464635 TMEM117Q9H0C3 514 aa12.75□□□□□ -0.37
USP54-209ENST00000464635 POLD4Q9HCU8 107 aa12.75□□□□□ -0.37
USP54-209ENST00000464635 C11orf16Q9NQ32 467 aa12.75□□□□□ -0.37
USP54-209ENST00000464635 AIPL1Q9NZN9 384 aa12.75□□□□□ -0.37
USP54-209ENST00000464635 SUCLA2Q9P2R7 463 aaPredicted RBP12.75□□□□□ -0.37
USP54-209ENST00000464635 COQ4Q9Y3A0 265 aa12.75□□□□□ -0.37
USP54-209ENST00000464635 BZW2Q9Y6E2 419 aaKnown RBP12.75□□□□□ -0.37
USP54-209ENST00000464635 FAM86C2PA6NEL3 165 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 MBTPS2O43462 519 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 ZSCAN20P17040 1043 aaPredicted RBP12.74□□□□□ -0.37
USP54-209ENST00000464635 SSTR3P32745 418 aaPredicted RBP12.74□□□□□ -0.37
USP54-209ENST00000464635 NRIP1P48552 1158 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 FMO5P49326 533 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 VAMP7P51809 220 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 AP3M2P53677 418 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 ERVFC1P60507 584 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 ZP2Q05996 745 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 MAPK8IP2Q13387 824 aaPredicted RBP12.74□□□□□ -0.37
USP54-209ENST00000464635 ADAM15Q13444 863 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 KYAT1Q16773 422 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 PUS10Q3MIT2 529 aaKnown RBP12.74□□□□□ -0.37
USP54-209ENST00000464635 DPY19L2P1Q6NXN4 242 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 FAM43BQ6ZT52 329 aaPredicted RBP12.74□□□□□ -0.37
USP54-209ENST00000464635 TAS1R3Q7RTX0 852 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 RBM23Q86U06 439 aaKnown RBP12.74□□□□□ -0.37
USP54-209ENST00000464635 RHPN2Q8IUC4 686 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 THNSL1Q8IYQ7 743 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms