RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 FSD2A1L4K1 749 aa21.43■■□□□ 1.02
COL9A3-204ENST00000463487 MAPK13O15264 365 aa21.43■■□□□ 1.02
COL9A3-204ENST00000463487 KIF4AO95239 1232 aa21.43■■□□□ 1.02
COL9A3-204ENST00000463487 TNNC2P02585 160 aa21.43■■□□□ 1.02
COL9A3-204ENST00000463487 SOD2P04179 222 aa21.43■■□□□ 1.02
COL9A3-204ENST00000463487 CCNE1P24864 410 aa21.43■■□□□ 1.02
COL9A3-204ENST00000463487 LRPAP1P30533 357 aa21.43■■□□□ 1.02
COL9A3-204ENST00000463487 CA8P35219 290 aa21.43■■□□□ 1.02
COL9A3-204ENST00000463487 TFAMQ00059 246 aaKnown RBP21.43■■□□□ 1.02
COL9A3-204ENST00000463487 SOX4Q06945 474 aaPredicted RBP21.43■■□□□ 1.02
COL9A3-204ENST00000463487 CYP24A1Q07973 514 aa21.43■■□□□ 1.02
COL9A3-204ENST00000463487 ADAM9Q13443 819 aa21.43■■□□□ 1.02
COL9A3-204ENST00000463487 SMC1AQ14683 1233 aaKnown RBP21.43■■□□□ 1.02
COL9A3-204ENST00000463487 PSMD6Q15008 389 aa21.43■■□□□ 1.02
COL9A3-204ENST00000463487 ZCWPW2Q504Y3 356 aa21.43■■□□□ 1.02
COL9A3-204ENST00000463487 KLHL10Q6JEL2 608 aa21.43■■□□□ 1.02
COL9A3-204ENST00000463487 KIAA1841Q6NSI8 718 aa21.43■■□□□ 1.02
COL9A3-204ENST00000463487 FUT10Q6P4F1 479 aa21.43■■□□□ 1.02
COL9A3-204ENST00000463487 TMEM173Q86WV6 379 aaPredicted RBP21.43■■□□□ 1.02
COL9A3-204ENST00000463487 WDR49Q8IV35 697 aa21.43■■□□□ 1.02
COL9A3-204ENST00000463487 MICALL1Q8N3F8 863 aa21.43■■□□□ 1.02
COL9A3-204ENST00000463487 MLKLQ8NB16 471 aa21.43■■□□□ 1.02
COL9A3-204ENST00000463487 ZSWIM2Q8NEG5 633 aa21.43■■□□□ 1.02
COL9A3-204ENST00000463487 NSUN3Q9H649 340 aaKnown RBP21.43■■□□□ 1.02
COL9A3-204ENST00000463487 PDE11AQ9HCR9 933 aa21.43■■□□□ 1.02
COL9A3-204ENST00000463487 PLXNA4Q9HCM2 1894 aa21.43■■□□□ 1.02
COL9A3-204ENST00000463487 CSPG5O95196 566 aa21.42■■□□□ 1.02
COL9A3-204ENST00000463487 URODP06132 367 aa21.42■■□□□ 1.02
COL9A3-204ENST00000463487 KRT13P13646 458 aa21.42■■□□□ 1.02
COL9A3-204ENST00000463487 TNNI1P19237 187 aa21.42■■□□□ 1.02
COL9A3-204ENST00000463487 PSMC2P35998 433 aaKnown RBP21.42■■□□□ 1.02
COL9A3-204ENST00000463487 FKBP3Q00688 224 aaKnown RBP21.42■■□□□ 1.02
COL9A3-204ENST00000463487 PAK1Q13153 545 aa21.42■■□□□ 1.02
COL9A3-204ENST00000463487 DUOXA2Q1HG44 320 aa21.42■■□□□ 1.02
COL9A3-204ENST00000463487 FOXR2Q6PJQ5 311 aa21.42■■□□□ 1.02
COL9A3-204ENST00000463487 BCL7CQ8WUZ0 217 aaPredicted RBP21.42■■□□□ 1.02
COL9A3-204ENST00000463487 RABGGTAQ92696 567 aa21.42■■□□□ 1.02
COL9A3-204ENST00000463487 PAAF1Q9BRP4 392 aa21.42■■□□□ 1.02
COL9A3-204ENST00000463487 DPP3Q9NY33 737 aa21.42■■□□□ 1.02
COL9A3-204ENST00000463487 CACNG4Q9UBN1 327 aa21.42■■□□□ 1.02
COL9A3-204ENST00000463487 ITGA11Q9UKX5 1188 aa21.42■■□□□ 1.02
COL9A3-204ENST00000463487 CHD9Q3L8U1 2897 aa21.42■■□□□ 1.02
COL9A3-204ENST00000463487 ARHGEF37A1IGU5 675 aa21.41■■□□□ 1.02
COL9A3-204ENST00000463487 DLATP10515 647 aaKnown RBP21.41■■□□□ 1.02
COL9A3-204ENST00000463487 CTSAP10619 480 aa21.41■■□□□ 1.02
COL9A3-204ENST00000463487 EPB41P11171 864 aaKnown RBP21.41■■□□□ 1.02
COL9A3-204ENST00000463487 DNAJB1P25685 340 aa21.41■■□□□ 1.02
COL9A3-204ENST00000463487 AP3M2P53677 418 aa21.41■■□□□ 1.02
COL9A3-204ENST00000463487 CREMQ03060 361 aa21.41■■□□□ 1.02
COL9A3-204ENST00000463487 USP41Q3LFD5 358 aa21.41■■□□□ 1.02
COL9A3-204ENST00000463487 PLPP4Q5VZY2 271 aa21.41■■□□□ 1.02
COL9A3-204ENST00000463487 PDXDC1Q6P996 788 aa21.41■■□□□ 1.02
COL9A3-204ENST00000463487 INTS8Q75QN2 995 aaKnown RBP21.41■■□□□ 1.02
COL9A3-204ENST00000463487 EFCAB13Q8IY85 973 aa21.41■■□□□ 1.02
COL9A3-204ENST00000463487 HASPINQ8TF76 798 aa21.41■■□□□ 1.02
COL9A3-204ENST00000463487 NELFBQ8WX92 580 aa21.41■■□□□ 1.02
COL9A3-204ENST00000463487 CCDC127Q96BQ5 260 aa21.41■■□□□ 1.02
COL9A3-204ENST00000463487 MFSD14AQ96MC6 490 aa21.41■■□□□ 1.02
COL9A3-204ENST00000463487 CGRRF1Q99675 332 aa21.41■■□□□ 1.02
COL9A3-204ENST00000463487 MKNK1Q9BUB5 465 aa21.41■■□□□ 1.02
COL9A3-204ENST00000463487 HERC2P3Q9BVR0 1158 aa21.41■■□□□ 1.02
COL9A3-204ENST00000463487 MRPL17Q9NRX2 175 aaKnown RBP21.41■■□□□ 1.02
COL9A3-204ENST00000463487 ANK1P16157 1881 aa21.41■■□□□ 1.02
COL9A3-204ENST00000463487 FGFR1OPO95684 399 aaKnown RBP21.4■■□□□ 1.02
COL9A3-204ENST00000463487 BMP6P22004 513 aa21.4■■□□□ 1.02
COL9A3-204ENST00000463487 PNPLA4P41247 253 aa21.4■■□□□ 1.02
COL9A3-204ENST00000463487 GLUD2P49448 558 aa21.4■■□□□ 1.02
COL9A3-204ENST00000463487 SASS6Q6UVJ0 657 aa21.4■■□□□ 1.02
COL9A3-204ENST00000463487 FAM186BQ8IYM0 893 aa21.4■■□□□ 1.02
COL9A3-204ENST00000463487 ZNF560Q96MR9 790 aa21.4■■□□□ 1.02
COL9A3-204ENST00000463487 ZBP1Q9H171 429 aa21.4■■□□□ 1.02
COL9A3-204ENST00000463487 CTNND2Q9UQB3 1225 aa21.4■■□□□ 1.02
COL9A3-204ENST00000463487 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP21.39■■□□□ 1.01
COL9A3-204ENST00000463487 PPP1R3GB7ZBB8 358 aa21.39■■□□□ 1.01
COL9A3-204ENST00000463487 FSCN2O14926 492 aa21.39■■□□□ 1.01
COL9A3-204ENST00000463487 SLC16A3O15427 465 aaKnown RBP21.39■■□□□ 1.01
COL9A3-204ENST00000463487 NCK2O43639 380 aa21.39■■□□□ 1.01
COL9A3-204ENST00000463487 CXCL14O95715 111 aa21.39■■□□□ 1.01
COL9A3-204ENST00000463487 ERVFC1P60507 584 aa21.39■■□□□ 1.01
COL9A3-204ENST00000463487 ENPEPQ07075 957 aa21.39■■□□□ 1.01
COL9A3-204ENST00000463487 FAM171A1Q5VUB5 890 aa21.39■■□□□ 1.01
COL9A3-204ENST00000463487 C9orf57Q5W0N0 161 aa21.39■■□□□ 1.01
COL9A3-204ENST00000463487 ANKRD40Q6AI12 368 aa21.39■■□□□ 1.01
COL9A3-204ENST00000463487 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.39■■□□□ 1.01
COL9A3-204ENST00000463487 GPR65Q8IYL9 337 aa21.39■■□□□ 1.01
COL9A3-204ENST00000463487 MAFAQ8NHW3 353 aaPredicted RBP21.39■■□□□ 1.01
COL9A3-204ENST00000463487 TMC2Q8TDI7 906 aa21.39■■□□□ 1.01
COL9A3-204ENST00000463487 CDCA3Q99618 268 aaPredicted RBP21.39■■□□□ 1.01
COL9A3-204ENST00000463487 EMILIN2Q9BXX0 1053 aa21.39■■□□□ 1.01
COL9A3-204ENST00000463487 MTMR12Q9C0I1 747 aa21.39■■□□□ 1.01
COL9A3-204ENST00000463487 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP21.39■■□□□ 1.01
COL9A3-204ENST00000463487 INTS13Q9NVM9 706 aa21.39■■□□□ 1.01
COL9A3-204ENST00000463487 CHD7Q9P2D1 2997 aa21.39■■□□□ 1.01
COL9A3-204ENST00000463487 SZT2Q5T011 3432 aa21.38■■□□□ 1.01
COL9A3-204ENST00000463487 F8W810 466 aa21.38■■□□□ 1.01
COL9A3-204ENST00000463487 CD44P16070 742 aaKnown RBP21.38■■□□□ 1.01
COL9A3-204ENST00000463487 CASP4P49662 377 aa21.38■■□□□ 1.01
COL9A3-204ENST00000463487 NLRP12P59046 1061 aa21.38■■□□□ 1.01
COL9A3-204ENST00000463487 CAMK1Q14012 370 aa21.38■■□□□ 1.01
COL9A3-204ENST00000463487 KLHL40Q2TBA0 621 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms