RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 SRGAP1Q7Z6B7 1085 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 CATIPQ7Z7H3 387 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 ATG4DQ86TL0 474 aaPredicted RBP5.32□□□□□ -1.56
CSMD3-205ENST00000462254 DDX53Q86TM3 631 aaKnown RBP5.32□□□□□ -1.56
CSMD3-205ENST00000462254 ZFPM1Q8IX07 1006 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 MB21D2Q8IYB1 491 aaPredicted RBP5.32□□□□□ -1.56
CSMD3-205ENST00000462254 CRACR2BQ8N4Y2 399 aaPredicted RBP5.32□□□□□ -1.56
CSMD3-205ENST00000462254 KCTD13Q8WZ19 329 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 DYNLL2Q96FJ2 89 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 LRGUKQ96M69 825 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 NEK1Q96PY6 1258 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 NAA15Q9BXJ9 866 aaKnown RBP5.32□□□□□ -1.56
CSMD3-205ENST00000462254 SLC12A9Q9BXP2 914 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 NACAP1Q9BZK3 213 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 TM6SF1Q9BZW5 370 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 SP110Q9HB58 689 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 EMC7Q9NPA0 242 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 MCM9Q9NXL9 1143 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 SAMD15Q9P1V8 674 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 WHRNQ9P202 907 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 SCAF8Q9UPN6 1271 aaKnown RBP5.32□□□□□ -1.56
CSMD3-205ENST00000462254 MRFAP1Q9Y605 127 aa5.32□□□□□ -1.56
CSMD3-205ENST00000462254 RLFQ13129 1914 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 SSC5DA1L4H1 1573 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 SSU72P8A0A1W2PR75 194 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 GLTPD2A6NH11 291 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 TCP10L2B9ZVM9 353 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 F5H423 210 aaPredicted RBP5.31□□□□□ -1.56
CSMD3-205ENST00000462254 GAS7O60861 476 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 ENTPD3O75355 529 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 PRDM1O75626 825 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 ZNF205O95201 554 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 LARGE1O95461 756 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 IL33O95760 270 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 GSNP06396 782 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 NAT1P18440 290 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 RPS6KB1P23443 525 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 PSMA5P28066 241 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 ANP32AP39687 249 aaKnown RBP5.31□□□□□ -1.56
CSMD3-205ENST00000462254 TM4SF4P48230 202 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 MMP14P50281 582 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 SESN3P58005 492 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 GABPAQ06546 454 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 TOB2Q14106 344 aaPredicted RBP5.31□□□□□ -1.56
CSMD3-205ENST00000462254 NTRK3Q16288 839 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 TIGD5Q53EQ6 642 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 RTP2Q5QGT7 225 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 JAKMIP3Q5VZ66 844 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 POMZP3Q6PJE2 187 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 LVRNQ6Q4G3 990 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 BLOC1S2Q6QNY1 142 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 MFSD6Q6ZSS7 791 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 CHST3Q7LGC8 479 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 TRIM59Q8IWR1 403 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 SLC44A5Q8NCS7 719 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 ACRBPQ8NEB7 543 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 NCOA7Q8NI08 942 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 SLC35G2Q8TBE7 412 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 LINC01599Q8WXQ3 324 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 SNX21Q969T3 373 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 RCC1LQ96I51 464 aaKnown RBP5.31□□□□□ -1.56
CSMD3-205ENST00000462254 TBATAQ96M53 351 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 MCMBPQ9BTE3 642 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 CDADC1Q9BWV3 514 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 LRRC2Q9BYS8 371 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 AGXT2Q9BYV1 514 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 DNAJC18Q9H819 358 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 VTA1Q9NP79 307 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 TRMT13Q9NUP7 481 aaKnown RBP5.31□□□□□ -1.56
CSMD3-205ENST00000462254 AP5S1Q9NUS5 200 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 HACL1Q9UJ83 578 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 EMC9Q9Y3B6 208 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 CYP46A1Q9Y6A2 500 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 LOC285556D6RIA3 1793 aa5.31□□□□□ -1.56
CSMD3-205ENST00000462254 RBBP6Q7Z6E9 1792 aaKnown RBP5.31□□□□□ -1.56
CSMD3-205ENST00000462254 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.3□□□□□ -1.56
CSMD3-205ENST00000462254 BLACEA4D250 179 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 TRIM75PA6NK02 468 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 NOTOA8MTQ0 251 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 H7C1D1 291 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 AQP7O14520 342 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 ORC4O43929 436 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 PPM1BO75688 479 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 CRTAMO95727 393 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 EFEMP2O95967 443 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 HRGP04196 525 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 IFNGR1P15260 489 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 AKAP5P24588 427 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 GFRA1P56159 465 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 ODF1Q14990 250 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 LONRF1Q17RB8 773 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 RRP12Q5JTH9 1297 aaKnown RBP5.3□□□□□ -1.56
CSMD3-205ENST00000462254 FKBP1CQ5VVH2 108 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 MZT2AQ6P582 158 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 Q6ZUG5 572 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 RALYLQ86SE5 291 aaKnown RBP5.3□□□□□ -1.56
CSMD3-205ENST00000462254 SAPCD2Q86UD0 394 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 FAM83AQ86UY5 434 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 C11orf74Q86VG3 221 aa5.3□□□□□ -1.56
CSMD3-205ENST00000462254 MYLK4Q86YV6 388 aaPredicted RBP5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms