RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 SNX24Q9Y343 169 aa16.1■□□□□ 0.17
LDLR-202ENST00000455727 RRP15Q9Y3B9 282 aaKnown RBP16.1■□□□□ 0.17
LDLR-202ENST00000455727 MROH7Q68CQ1 1323 aa16.09■□□□□ 0.17
LDLR-202ENST00000455727 A0A0G2JLL6 359 aaPredicted RBP16.09■□□□□ 0.17
LDLR-202ENST00000455727 POTEJP0CG39 1038 aa16.09■□□□□ 0.17
LDLR-202ENST00000455727 RRM1P23921 792 aa16.09■□□□□ 0.17
LDLR-202ENST00000455727 TCF7P36402 384 aaPredicted RBP16.09■□□□□ 0.17
LDLR-202ENST00000455727 MDH1P40925 334 aaKnown RBP16.09■□□□□ 0.17
LDLR-202ENST00000455727 PLTPP55058 493 aa16.09■□□□□ 0.17
LDLR-202ENST00000455727 PDCLQ13371 301 aa16.09■□□□□ 0.17
LDLR-202ENST00000455727 R3HDM1Q15032 1099 aaKnown RBP16.09■□□□□ 0.17
LDLR-202ENST00000455727 IER5Q5VY09 327 aa16.09■□□□□ 0.17
LDLR-202ENST00000455727 SPOPLQ6IQ16 392 aa16.09■□□□□ 0.17
LDLR-202ENST00000455727 PRRT2Q7Z6L0 340 aaPredicted RBP16.09■□□□□ 0.17
LDLR-202ENST00000455727 NCAPG2Q86XI2 1143 aa16.09■□□□□ 0.17
LDLR-202ENST00000455727 ABRAQ8N0Z2 381 aa16.09■□□□□ 0.17
LDLR-202ENST00000455727 NLGN2Q8NFZ4 835 aa16.09■□□□□ 0.17
LDLR-202ENST00000455727 CPA5Q8WXQ8 436 aa16.09■□□□□ 0.17
LDLR-202ENST00000455727 MPHOSPH6Q99547 160 aaKnown RBP16.09■□□□□ 0.17
LDLR-202ENST00000455727 PABPC3Q9H361 631 aaKnown RBP16.09■□□□□ 0.17
LDLR-202ENST00000455727 ANKFY1Q9P2R3 1169 aa16.09■□□□□ 0.17
LDLR-202ENST00000455727 ATP8A1Q9Y2Q0 1164 aa16.09■□□□□ 0.17
LDLR-202ENST00000455727 TCRBV7S2A1N4TA0A589 114 aa16.08■□□□□ 0.17
LDLR-202ENST00000455727 CLDN3O15551 220 aa16.08■□□□□ 0.17
LDLR-202ENST00000455727 EDN1P05305 212 aa16.08■□□□□ 0.17
LDLR-202ENST00000455727 RPL21P46778 160 aaKnown RBP16.08■□□□□ 0.17
LDLR-202ENST00000455727 ZBTB41Q5SVQ8 909 aa16.08■□□□□ 0.17
LDLR-202ENST00000455727 PHF13Q86YI8 300 aaPredicted RBP16.08■□□□□ 0.17
LDLR-202ENST00000455727 BRSK2Q8IWQ3 736 aa16.08■□□□□ 0.17
LDLR-202ENST00000455727 FBXO25Q8TCJ0 367 aa16.08■□□□□ 0.17
LDLR-202ENST00000455727 BBXQ8WY36 941 aaPredicted RBP16.08■□□□□ 0.17
LDLR-202ENST00000455727 CYFIP2Q96F07 1278 aa16.08■□□□□ 0.17
LDLR-202ENST00000455727 MTRF1LQ9UGC7 380 aaKnown RBP16.08■□□□□ 0.17
LDLR-202ENST00000455727 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.08■□□□□ 0.17
LDLR-202ENST00000455727 PCDHB4Q9Y5E5 795 aa16.08■□□□□ 0.17
LDLR-202ENST00000455727 PASKQ96RG2 1323 aa16.08■□□□□ 0.16
LDLR-202ENST00000455727 MSCO60682 206 aa16.08■□□□□ 0.16
LDLR-202ENST00000455727 PEX10O60683 326 aa16.08■□□□□ 0.16
LDLR-202ENST00000455727 SLC25A27O95847 323 aa16.08■□□□□ 0.16
LDLR-202ENST00000455727 CALCAP01258 141 aa16.08■□□□□ 0.16
LDLR-202ENST00000455727 LSP1P33241 339 aa16.08■□□□□ 0.16
LDLR-202ENST00000455727 PMS2P54278 862 aa16.08■□□□□ 0.16
LDLR-202ENST00000455727 NOP14P78316 857 aaKnown RBP16.08■□□□□ 0.16
LDLR-202ENST00000455727 LIN9Q5TKA1 542 aa16.08■□□□□ 0.16
LDLR-202ENST00000455727 CDCA2Q69YH5 1023 aaPredicted RBP16.08■□□□□ 0.16
LDLR-202ENST00000455727 CCDC105Q8IYK2 499 aa16.08■□□□□ 0.16
LDLR-202ENST00000455727 TCP11Q8WWU5 503 aa16.08■□□□□ 0.16
LDLR-202ENST00000455727 PRPF31Q8WWY3 499 aaKnown RBP16.08■□□□□ 0.16
LDLR-202ENST00000455727 CNKSR2Q8WXI2 1034 aa16.08■□□□□ 0.16
LDLR-202ENST00000455727 CCDC113Q9H0I3 377 aa16.08■□□□□ 0.16
LDLR-202ENST00000455727 AZI2Q9H6S1 392 aa16.08■□□□□ 0.16
LDLR-202ENST00000455727 MRPL47Q9HD33 250 aaKnown RBP16.08■□□□□ 0.16
LDLR-202ENST00000455727 ADARB2Q9NS39 739 aaKnown RBP16.08■□□□□ 0.16
LDLR-202ENST00000455727 FAM189A1O60320 539 aa16.07■□□□□ 0.16
LDLR-202ENST00000455727 LGR5O75473 907 aa16.07■□□□□ 0.16
LDLR-202ENST00000455727 TOM1L1O75674 476 aa16.07■□□□□ 0.16
LDLR-202ENST00000455727 GNA15P30679 374 aa16.07■□□□□ 0.16
LDLR-202ENST00000455727 NOMO3P69849 1222 aa16.07■□□□□ 0.16
LDLR-202ENST00000455727 IRX3P78415 501 aaPredicted RBP16.07■□□□□ 0.16
LDLR-202ENST00000455727 NCOA4Q13772 614 aa16.07■□□□□ 0.16
LDLR-202ENST00000455727 MXD4Q14582 209 aaPredicted RBP16.07■□□□□ 0.16
LDLR-202ENST00000455727 TTC19Q6DKK2 380 aaPredicted RBP16.07■□□□□ 0.16
LDLR-202ENST00000455727 TMEM270Q6UE05 265 aa16.07■□□□□ 0.16
LDLR-202ENST00000455727 GADL1Q6ZQY3 521 aa16.07■□□□□ 0.16
LDLR-202ENST00000455727 WDR49Q8IV35 697 aa16.07■□□□□ 0.16
LDLR-202ENST00000455727 OR5B17Q8NGF7 314 aa16.07■□□□□ 0.16
LDLR-202ENST00000455727 DCPSQ96C86 337 aaKnown RBP16.07■□□□□ 0.16
LDLR-202ENST00000455727 MRPL4Q9BYD3 311 aaKnown RBP16.07■□□□□ 0.16
LDLR-202ENST00000455727 EPN3Q9H201 632 aa16.07■□□□□ 0.16
LDLR-202ENST00000455727 EPB41L4BQ9H329 900 aa16.07■□□□□ 0.16
LDLR-202ENST00000455727 NUB1Q9Y5A7 615 aa16.07■□□□□ 0.16
LDLR-202ENST00000455727 CXCL11O14625 94 aa16.07■□□□□ 0.16
LDLR-202ENST00000455727 PROSCO94903 275 aa16.07■□□□□ 0.16
LDLR-202ENST00000455727 MAN1A1P33908 653 aa16.07■□□□□ 0.16
LDLR-202ENST00000455727 IREB2P48200 963 aaKnown RBP16.07■□□□□ 0.16
LDLR-202ENST00000455727 PLPPR4Q7Z2D5 763 aa16.07■□□□□ 0.16
LDLR-202ENST00000455727 RBBP8NLQ8NC74 664 aaPredicted RBP16.07■□□□□ 0.16
LDLR-202ENST00000455727 ART4Q93070 314 aa16.07■□□□□ 0.16
LDLR-202ENST00000455727 CENPHQ9H3R5 247 aa16.07■□□□□ 0.16
LDLR-202ENST00000455727 IGKV6-21A0A0C4DH24 114 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 EBAG9O00559 213 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 CNMDO75829 334 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 ASS1P00966 412 aaKnown RBP16.06■□□□□ 0.16
LDLR-202ENST00000455727 ZNF132P52740 706 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 GUCY1A3Q02108 690 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 C1QBPQ07021 282 aaKnown RBP16.06■□□□□ 0.16
LDLR-202ENST00000455727 SLMAPQ14BN4 828 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 SURF1Q15526 300 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 KCTD19Q17RG1 926 aaPredicted RBP16.06■□□□□ 0.16
LDLR-202ENST00000455727 PLEKHA7Q6IQ23 1121 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 SYDE1Q6ZW31 735 aaPredicted RBP16.06■□□□□ 0.16
LDLR-202ENST00000455727 CROCCP2Q86T23 111 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 HOOK3Q86VS8 718 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 ERO1BQ86YB8 467 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 SULF1Q8IWU6 871 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 UBR7Q8N806 425 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 IMPG2Q9BZV3 1241 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 FAM107BQ9H098 131 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 ADAM22Q9P0K1 906 aa16.06■□□□□ 0.16
LDLR-202ENST00000455727 SLC12A6Q9UHW9 1150 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms