RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 NFIL3Q16649 462 aa30.35■■■□□ 2.45
SMARCC1-203ENST00000454240 TCEAL5Q5H9L2 206 aa30.35■■■□□ 2.45
SMARCC1-203ENST00000454240 TAS1R1Q7RTX1 841 aa30.35■■■□□ 2.45
SMARCC1-203ENST00000454240 EFCAB13Q8IY85 973 aa30.35■■■□□ 2.45
SMARCC1-203ENST00000454240 C3orf58Q8NDZ4 430 aa30.35■■■□□ 2.45
SMARCC1-203ENST00000454240 HASPINQ8TF76 798 aa30.35■■■□□ 2.45
SMARCC1-203ENST00000454240 ENTPD7Q9NQZ7 604 aa30.35■■■□□ 2.45
SMARCC1-203ENST00000454240 NR3C1P04150 777 aa30.34■■■□□ 2.45
SMARCC1-203ENST00000454240 ZCWPW2Q504Y3 356 aa30.34■■■□□ 2.45
SMARCC1-203ENST00000454240 PLPP4Q5VZY2 271 aa30.34■■■□□ 2.45
SMARCC1-203ENST00000454240 ADSSL1Q8N142 457 aa30.34■■■□□ 2.45
SMARCC1-203ENST00000454240 TMEM130Q8N3G9 435 aa30.34■■■□□ 2.45
SMARCC1-203ENST00000454240 MRPL43Q8N983 215 aaKnown RBP30.34■■■□□ 2.45
SMARCC1-203ENST00000454240 RDH13Q8NBN7 331 aa30.34■■■□□ 2.45
SMARCC1-203ENST00000454240 BEST2Q8NFU1 509 aa30.34■■■□□ 2.45
SMARCC1-203ENST00000454240 PPM1EQ8WY54 764 aa30.34■■■□□ 2.45
SMARCC1-203ENST00000454240 HERC2P3Q9BVR0 1158 aa30.34■■■□□ 2.45
SMARCC1-203ENST00000454240 PDE11AQ9HCR9 933 aa30.34■■■□□ 2.45
SMARCC1-203ENST00000454240 SF3B1O75533 1304 aaKnown RBP eCLIP30.33■■■□□ 2.453e-6■■■■■ 137.9
SMARCC1-203ENST00000454240 EXOC3O60645 756 aa30.33■■■□□ 2.45
SMARCC1-203ENST00000454240 SMC1AQ14683 1233 aaKnown RBP30.33■■■□□ 2.45
SMARCC1-203ENST00000454240 BMS1Q14692 1282 aaKnown RBP30.33■■■□□ 2.45
SMARCC1-203ENST00000454240 ADGRD2Q7Z7M1 963 aa30.33■■■□□ 2.45
SMARCC1-203ENST00000454240 CHST7Q9NS84 486 aa30.33■■■□□ 2.45
SMARCC1-203ENST00000454240 IRAK3Q9Y616 596 aa30.33■■■□□ 2.45
SMARCC1-203ENST00000454240 VWA8A3KMH1 1905 aa30.33■■■□□ 2.45
SMARCC1-203ENST00000454240 CXCL14O95715 111 aa30.32■■■□□ 2.44
SMARCC1-203ENST00000454240 GUCY2FP51841 1108 aa30.32■■■□□ 2.44
SMARCC1-203ENST00000454240 SURF1Q15526 300 aa30.32■■■□□ 2.44
SMARCC1-203ENST00000454240 CENPPQ6IPU0 288 aa30.32■■■□□ 2.44
SMARCC1-203ENST00000454240 MFSD14AQ96MC6 490 aa30.32■■■□□ 2.44
SMARCC1-203ENST00000454240 NUP62CLQ9H1M0 184 aa30.32■■■□□ 2.44
SMARCC1-203ENST00000454240 PRUNE2Q8WUY3 3088 aa30.31■■■□□ 2.44
SMARCC1-203ENST00000454240 HIDE1A8MVS5 230 aa30.31■■■□□ 2.44
SMARCC1-203ENST00000454240 BIN1O00499 593 aa30.31■■■□□ 2.44
SMARCC1-203ENST00000454240 CYP24A1Q07973 514 aa30.31■■■□□ 2.44
SMARCC1-203ENST00000454240 TRIML1Q8N9V2 468 aa30.31■■■□□ 2.44
SMARCC1-203ENST00000454240 C2orf71A6NGG8 1288 aa30.3■■■□□ 2.44
SMARCC1-203ENST00000454240 LILRB3O75022 631 aa30.3■■■□□ 2.44
SMARCC1-203ENST00000454240 SLC34A2O95436 690 aa30.3■■■□□ 2.44
SMARCC1-203ENST00000454240 CD44P16070 742 aaKnown RBP30.3■■■□□ 2.44
SMARCC1-203ENST00000454240 PPP1R2P41236 205 aa30.3■■■□□ 2.44
SMARCC1-203ENST00000454240 HYAL1Q12794 435 aa30.3■■■□□ 2.44
SMARCC1-203ENST00000454240 ELAVL2Q12926 359 aaKnown RBP30.3■■■□□ 2.44
SMARCC1-203ENST00000454240 PSMD6Q15008 389 aa30.3■■■□□ 2.44
SMARCC1-203ENST00000454240 PTPN14Q15678 1187 aa30.3■■■□□ 2.44
SMARCC1-203ENST00000454240 EDRF1Q3B7T1 1238 aa30.3■■■□□ 2.44
SMARCC1-203ENST00000454240 USP41Q3LFD5 358 aa30.3■■■□□ 2.44
SMARCC1-203ENST00000454240 KIAA0319Q5VV43 1072 aa30.3■■■□□ 2.44
SMARCC1-203ENST00000454240 AUTS2Q8WXX7 1259 aa30.3■■■□□ 2.44
SMARCC1-203ENST00000454240 PPP2R3CQ969Q6 453 aa30.3■■■□□ 2.44
SMARCC1-203ENST00000454240 DPP3Q9NY33 737 aa30.3■■■□□ 2.44
SMARCC1-203ENST00000454240 SCN1AP35498 2009 aa30.3■■■□□ 2.44
SMARCC1-203ENST00000454240 ANO9A1A5B4 782 aa30.29■■■□□ 2.44
SMARCC1-203ENST00000454240 MCM4P33991 863 aa30.29■■■□□ 2.44
SMARCC1-203ENST00000454240 DSG1Q02413 1049 aa30.29■■■□□ 2.44
SMARCC1-203ENST00000454240 C9orf57Q5W0N0 161 aa30.29■■■□□ 2.44
SMARCC1-203ENST00000454240 CACTINQ8WUQ7 758 aaKnown RBP30.29■■■□□ 2.44
SMARCC1-203ENST00000454240 DHTKD1Q96HY7 919 aaPredicted RBP30.29■■■□□ 2.44
SMARCC1-203ENST00000454240 PPP1R3GB7ZBB8 358 aa30.28■■■□□ 2.44
SMARCC1-203ENST00000454240 PIRO00625 290 aa30.28■■■□□ 2.44
SMARCC1-203ENST00000454240 TRAPPC3O43617 180 aa30.28■■■□□ 2.44
SMARCC1-203ENST00000454240 NR2F2P24468 414 aa30.28■■■□□ 2.44
SMARCC1-203ENST00000454240 RPL13P26373 211 aaKnown RBP30.28■■■□□ 2.44
SMARCC1-203ENST00000454240 BRCC3P46736 316 aa30.28■■■□□ 2.44
SMARCC1-203ENST00000454240 GLUD2P49448 558 aa30.28■■■□□ 2.44
SMARCC1-203ENST00000454240 CASP4P49662 377 aa30.28■■■□□ 2.44
SMARCC1-203ENST00000454240 TFAMQ00059 246 aaKnown RBP30.28■■■□□ 2.44
SMARCC1-203ENST00000454240 STIM1Q13586 685 aa30.28■■■□□ 2.44
SMARCC1-203ENST00000454240 COL19A1Q14993 1142 aa30.28■■■□□ 2.44
SMARCC1-203ENST00000454240 FAM171A1Q5VUB5 890 aa30.28■■■□□ 2.44
SMARCC1-203ENST00000454240 GPR65Q8IYL9 337 aa30.28■■■□□ 2.44
SMARCC1-203ENST00000454240 B3GALT6Q96L58 329 aa30.28■■■□□ 2.44
SMARCC1-203ENST00000454240 GZF1Q9H116 711 aaPredicted RBP30.28■■■□□ 2.44
SMARCC1-203ENST00000454240 TLE6Q9H808 572 aa30.28■■■□□ 2.44
SMARCC1-203ENST00000454240 MRPL17Q9NRX2 175 aaKnown RBP30.28■■■□□ 2.44
SMARCC1-203ENST00000454240 INTS13Q9NVM9 706 aa30.28■■■□□ 2.44
SMARCC1-203ENST00000454240 SSX2IPQ9Y2D8 614 aa30.28■■■□□ 2.44
SMARCC1-203ENST00000454240 PTPRJQ12913 1337 aa30.27■■■□□ 2.44
SMARCC1-203ENST00000454240 TULP1O00294 542 aaPredicted RBP30.27■■■□□ 2.44
SMARCC1-203ENST00000454240 URODP06132 367 aa30.27■■■□□ 2.44
SMARCC1-203ENST00000454240 NRIP1P48552 1158 aa30.27■■■□□ 2.44
SMARCC1-203ENST00000454240 PMS1P54277 932 aaKnown RBP30.27■■■□□ 2.44
SMARCC1-203ENST00000454240 ADAM9Q13443 819 aa30.27■■■□□ 2.44
SMARCC1-203ENST00000454240 DUSP6Q16828 381 aa30.27■■■□□ 2.44
SMARCC1-203ENST00000454240 ANKRD40Q6AI12 368 aa30.27■■■□□ 2.44
SMARCC1-203ENST00000454240 RBM23Q86U06 439 aaKnown RBP30.27■■■□□ 2.44
SMARCC1-203ENST00000454240 WDR49Q8IV35 697 aa30.27■■■□□ 2.44
SMARCC1-203ENST00000454240 NUB1Q9Y5A7 615 aa30.27■■■□□ 2.44
SMARCC1-203ENST00000454240 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP30.26■■■□□ 2.43
SMARCC1-203ENST00000454240 PSMA7O14818 248 aa30.26■■■□□ 2.43
SMARCC1-203ENST00000454240 PPEF2O14830 753 aa30.26■■■□□ 2.43
SMARCC1-203ENST00000454240 PER2O15055 1255 aa30.26■■■□□ 2.43
SMARCC1-203ENST00000454240 MAPK13O15264 365 aa30.26■■■□□ 2.43
SMARCC1-203ENST00000454240 MBD3O95983 291 aa30.26■■■□□ 2.43
SMARCC1-203ENST00000454240 FGFR3P22607 806 aa30.26■■■□□ 2.43
SMARCC1-203ENST00000454240 CCNE1P24864 410 aa30.26■■■□□ 2.43
SMARCC1-203ENST00000454240 GTF2F1P35269 517 aaKnown RBP eCLIP30.26■■■□□ 2.43
SMARCC1-203ENST00000454240 RTP2Q5QGT7 225 aa30.26■■■□□ 2.43
SMARCC1-203ENST00000454240 CEP135Q66GS9 1140 aa30.26■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms