RNA–Protein interactions for RNA: ENST00000452372.1

COL9A3-202, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 596 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-202ENST00000452372 MRPL43Q8N983 215 aaKnown RBP21.69■■□□□ 1.06
COL9A3-202ENST00000452372 RABGGTAQ92696 567 aa21.69■■□□□ 1.06
COL9A3-202ENST00000452372 CDCA3Q99618 268 aaPredicted RBP21.69■■□□□ 1.06
COL9A3-202ENST00000452372 S1PR5Q9H228 398 aa21.69■■□□□ 1.06
COL9A3-202ENST00000452372 ADAM28Q9UKQ2 775 aa21.69■■□□□ 1.06
COL9A3-202ENST00000452372 USP15Q9Y4E8 981 aaPredicted RBP21.69■■□□□ 1.06
COL9A3-202ENST00000452372 LOC730098B7Z3J9 87 aa21.68■■□□□ 1.06
COL9A3-202ENST00000452372 TGFB1I1O43294 461 aa21.68■■□□□ 1.06
COL9A3-202ENST00000452372 TADA2AO75478 443 aa21.68■■□□□ 1.06
COL9A3-202ENST00000452372 CXCL14O95715 111 aa21.68■■□□□ 1.06
COL9A3-202ENST00000452372 SOD2P04179 222 aa21.68■■□□□ 1.06
COL9A3-202ENST00000452372 CTSAP10619 480 aa21.68■■□□□ 1.06
COL9A3-202ENST00000452372 SNRPFP62306 86 aaKnown RBP21.68■■□□□ 1.06
COL9A3-202ENST00000452372 SMC1AQ14683 1233 aaKnown RBP21.68■■□□□ 1.06
COL9A3-202ENST00000452372 KCNB1Q14721 858 aa21.68■■□□□ 1.06
COL9A3-202ENST00000452372 ZBTB6Q15916 424 aa21.68■■□□□ 1.06
COL9A3-202ENST00000452372 DCLRE1AQ6PJP8 1040 aa21.68■■□□□ 1.06
COL9A3-202ENST00000452372 ELOA2Q8IYF1 753 aaPredicted RBP21.68■■□□□ 1.06
COL9A3-202ENST00000452372 RNF168Q8IYW5 571 aaPredicted RBP21.68■■□□□ 1.06
COL9A3-202ENST00000452372 KIAA0895Q8NCT3 520 aa21.68■■□□□ 1.06
COL9A3-202ENST00000452372 SUSD6Q92537 303 aa21.68■■□□□ 1.06
COL9A3-202ENST00000452372 DDX27Q96GQ7 796 aaKnown RBP21.68■■□□□ 1.06
COL9A3-202ENST00000452372 CBWD1Q9BRT8 395 aa21.68■■□□□ 1.06
COL9A3-202ENST00000452372 IRAK3Q9Y616 596 aa21.68■■□□□ 1.06
COL9A3-202ENST00000452372 ZNF318Q5VUA4 2279 aa21.67■■□□□ 1.06
COL9A3-202ENST00000452372 KIAA0391O15091 583 aaKnown RBP21.67■■□□□ 1.06
COL9A3-202ENST00000452372 CLCNKBP51801 687 aa21.67■■□□□ 1.06
COL9A3-202ENST00000452372 UBE2HP62256 183 aa21.67■■□□□ 1.06
COL9A3-202ENST00000452372 PNOCQ13519 176 aa21.67■■□□□ 1.06
COL9A3-202ENST00000452372 UPP1Q16831 310 aa21.67■■□□□ 1.06
COL9A3-202ENST00000452372 KNOP1Q1ED39 458 aaKnown RBP21.67■■□□□ 1.06
COL9A3-202ENST00000452372 ARMCX5Q6P1M9 558 aa21.67■■□□□ 1.06
COL9A3-202ENST00000452372 FUT10Q6P4F1 479 aa21.67■■□□□ 1.06
COL9A3-202ENST00000452372 NELFCDQ8IXH7 590 aa21.67■■□□□ 1.06
COL9A3-202ENST00000452372 C18orf25Q96B23 403 aaPredicted RBP21.67■■□□□ 1.06
COL9A3-202ENST00000452372 POP1Q99575 1024 aaKnown RBP21.67■■□□□ 1.06
COL9A3-202ENST00000452372 PCIF1Q9H4Z3 704 aa21.67■■□□□ 1.06
COL9A3-202ENST00000452372 ASB7Q9H672 318 aa21.67■■□□□ 1.06
COL9A3-202ENST00000452372 GOLGA2P5Q9HBQ8 144 aa21.67■■□□□ 1.06
COL9A3-202ENST00000452372 MUTYHQ9UIF7 546 aa21.67■■□□□ 1.06
COL9A3-202ENST00000452372 HOOK1Q9UJC3 728 aaKnown RBP21.67■■□□□ 1.06
COL9A3-202ENST00000452372 GTF3C5Q9Y5Q8 519 aaPredicted RBP21.67■■□□□ 1.06
COL9A3-202ENST00000452372 ANK1P16157 1881 aa21.66■■□□□ 1.06
COL9A3-202ENST00000452372 C2orf71A6NGG8 1288 aa21.66■■□□□ 1.06
COL9A3-202ENST00000452372 TMEM189-UBE2V1I3L0A0 370 aa21.66■■□□□ 1.06
COL9A3-202ENST00000452372 EXTL3O43909 919 aa21.66■■□□□ 1.06
COL9A3-202ENST00000452372 KIF4AO95239 1232 aa21.66■■□□□ 1.06
COL9A3-202ENST00000452372 CYP3A5P20815 502 aa21.66■■□□□ 1.06
COL9A3-202ENST00000452372 RPL9P32969 192 aaKnown RBP21.66■■□□□ 1.06
COL9A3-202ENST00000452372 SPAG1Q07617 926 aa21.66■■□□□ 1.06
COL9A3-202ENST00000452372 CBX2Q14781 532 aaPredicted RBP21.66■■□□□ 1.06
COL9A3-202ENST00000452372 SYCE2Q6PIF2 218 aa21.66■■□□□ 1.06
COL9A3-202ENST00000452372 HS2ST1Q7LGA3 356 aa21.66■■□□□ 1.06
COL9A3-202ENST00000452372 TAS1R1Q7RTX1 841 aa21.66■■□□□ 1.06
COL9A3-202ENST00000452372 ZSWIM2Q8NEG5 633 aa21.66■■□□□ 1.06
COL9A3-202ENST00000452372 FAM122AQ96E09 287 aa21.66■■□□□ 1.06
COL9A3-202ENST00000452372 FAM212AQ96EL1 285 aa21.66■■□□□ 1.06
COL9A3-202ENST00000452372 SAAL1Q96ER3 474 aa21.66■■□□□ 1.06
COL9A3-202ENST00000452372 KIF12Q96FN5 646 aa21.66■■□□□ 1.06
COL9A3-202ENST00000452372 FAM213AQ9BRX8 229 aa21.66■■□□□ 1.06
COL9A3-202ENST00000452372 HERC2P3Q9BVR0 1158 aa21.66■■□□□ 1.06
COL9A3-202ENST00000452372 GPR62Q9BZJ7 368 aa21.66■■□□□ 1.06
COL9A3-202ENST00000452372 AGPAT3Q9NRZ7 376 aa21.66■■□□□ 1.06
COL9A3-202ENST00000452372 CHST7Q9NS84 486 aa21.66■■□□□ 1.06
COL9A3-202ENST00000452372 CGNQ9P2M7 1197 aaKnown RBP21.66■■□□□ 1.06
COL9A3-202ENST00000452372 UBQLN1Q9UMX0 589 aaKnown RBP21.66■■□□□ 1.06
COL9A3-202ENST00000452372 WDFY4Q6ZS81 3184 aa21.65■■□□□ 1.06
COL9A3-202ENST00000452372 KINO60870 393 aaKnown RBP21.65■■□□□ 1.06
COL9A3-202ENST00000452372 PRPF40AO75400 957 aaKnown RBP21.65■■□□□ 1.06
COL9A3-202ENST00000452372 B3GAT3O94766 335 aa21.65■■□□□ 1.06
COL9A3-202ENST00000452372 GPD1LQ8N335 351 aa21.65■■□□□ 1.06
COL9A3-202ENST00000452372 AUTS2Q8WXX7 1259 aa21.65■■□□□ 1.06
COL9A3-202ENST00000452372 SSX2IPQ9Y2D8 614 aa21.65■■□□□ 1.06
COL9A3-202ENST00000452372 DERAQ9Y315 318 aa21.65■■□□□ 1.06
COL9A3-202ENST00000452372 HCN4Q9Y3Q4 1203 aa21.65■■□□□ 1.06
COL9A3-202ENST00000452372 PIEZO1Q92508 2521 aa21.64■■□□□ 1.06
COL9A3-202ENST00000452372 SF3B1O75533 1304 aaKnown RBP eCLIP21.64■■□□□ 1.05
COL9A3-202ENST00000452372 MYO10Q9HD67 2058 aa21.64■■□□□ 1.05
COL9A3-202ENST00000452372 GOLGA8IPA6NC78 632 aa21.64■■□□□ 1.05
COL9A3-202ENST00000452372 GOLGA8JA6NMD2 632 aa21.64■■□□□ 1.05
COL9A3-202ENST00000452372 PODXLO00592 558 aa21.64■■□□□ 1.05
COL9A3-202ENST00000452372 XPOTO43592 962 aaKnown RBP21.64■■□□□ 1.05
COL9A3-202ENST00000452372 LILRB3O75022 631 aa21.64■■□□□ 1.05
COL9A3-202ENST00000452372 IL18RAPO95256 599 aa21.64■■□□□ 1.05
COL9A3-202ENST00000452372 IGFBP6P24592 240 aaPredicted RBP21.64■■□□□ 1.05
COL9A3-202ENST00000452372 PTPN14Q15678 1187 aa21.64■■□□□ 1.05
COL9A3-202ENST00000452372 USP41Q3LFD5 358 aa21.64■■□□□ 1.05
COL9A3-202ENST00000452372 KIAA0319Q5VV43 1072 aa21.64■■□□□ 1.05
COL9A3-202ENST00000452372 JADE1Q6IE81 842 aa21.64■■□□□ 1.05
COL9A3-202ENST00000452372 ANKRD54Q6NXT1 300 aa21.64■■□□□ 1.05
COL9A3-202ENST00000452372 CD300LGQ6UXG3 332 aa21.64■■□□□ 1.05
COL9A3-202ENST00000452372 C12orf56Q8IXR9 622 aa21.64■■□□□ 1.05
COL9A3-202ENST00000452372 SPATA20Q8TB22 786 aa21.64■■□□□ 1.05
COL9A3-202ENST00000452372 HASPINQ8TF76 798 aa21.64■■□□□ 1.05
COL9A3-202ENST00000452372 KIAA1586Q9HCI6 787 aa21.64■■□□□ 1.05
COL9A3-202ENST00000452372 MRPL17Q9NRX2 175 aaKnown RBP21.64■■□□□ 1.05
COL9A3-202ENST00000452372 HSPBP1Q9NZL4 362 aa21.64■■□□□ 1.05
COL9A3-202ENST00000452372 TUBGCP4Q9UGJ1 667 aa21.64■■□□□ 1.05
COL9A3-202ENST00000452372 C2CD2Q9Y426 696 aa21.64■■□□□ 1.05
COL9A3-202ENST00000452372 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms