RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, human

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF4-208	ENST00000452047	MYADM	Q96S97	322 aa		13.62	□□□□□ -0.23
CPSF4-208	ENST00000452047	PIDD1	Q9HB75	910 aa		13.62	□□□□□ -0.23
CPSF4-208	ENST00000452047	EPS15L1	Q9UBC2	864 aa		13.62	□□□□□ -0.23
CPSF4-208	ENST00000452047	TUBGCP4	Q9UGJ1	667 aa		13.62	□□□□□ -0.23
CPSF4-208	ENST00000452047	BACE2	Q9Y5Z0	518 aa		13.62	□□□□□ -0.23
CPSF4-208	ENST00000452047	CDY1	Q9Y6F8	540 aa		13.62	□□□□□ -0.23
CPSF4-208	ENST00000452047	TRAK2	O60296	914 aa		13.61	□□□□□ -0.23
CPSF4-208	ENST00000452047	TBC1D4	O60343	1298 aa		13.61	□□□□□ -0.23
CPSF4-208	ENST00000452047	POU2F2	P09086	479 aa		13.61	□□□□□ -0.23
CPSF4-208	ENST00000452047	CLTA	P09496	248 aa		13.61	□□□□□ -0.23
CPSF4-208	ENST00000452047	GBP2	P32456	591 aa	Predicted RBP	13.61	□□□□□ -0.23
CPSF4-208	ENST00000452047	TNFSF9	P41273	254 aa		13.61	□□□□□ -0.23
CPSF4-208	ENST00000452047	LIG4	P49917	911 aa		13.61	□□□□□ -0.23
CPSF4-208	ENST00000452047	GTF2B	Q00403	316 aa		13.61	□□□□□ -0.23
CPSF4-208	ENST00000452047	NHLH1	Q02575	133 aa		13.61	□□□□□ -0.23
CPSF4-208	ENST00000452047	TDG	Q13569	410 aa		13.61	□□□□□ -0.23
CPSF4-208	ENST00000452047	VARS2	Q5ST30	1063 aa	Known RBP	13.61	□□□□□ -0.23
CPSF4-208	ENST00000452047	ZBTB41	Q5SVQ8	909 aa		13.61	□□□□□ -0.23
CPSF4-208	ENST00000452047	AXDND1	Q5T1B0	1012 aa	Predicted RBP	13.61	□□□□□ -0.23
CPSF4-208	ENST00000452047	LIN9	Q5TKA1	542 aa		13.61	□□□□□ -0.23
CPSF4-208	ENST00000452047	SLC8B1	Q6J4K2	584 aa		13.61	□□□□□ -0.23
CPSF4-208	ENST00000452047	SLC39A4	Q6P5W5	647 aa		13.61	□□□□□ -0.23
CPSF4-208	ENST00000452047	MAP4K3	Q8IVH8	894 aa		13.61	□□□□□ -0.23
CPSF4-208	ENST00000452047	PRSS33	Q8NF86	280 aa		13.61	□□□□□ -0.23
CPSF4-208	ENST00000452047	SLC7A14	Q8TBB6	771 aa		13.61	□□□□□ -0.23
CPSF4-208	ENST00000452047	CLIC6	Q96NY7	704 aa		13.61	□□□□□ -0.23
CPSF4-208	ENST00000452047	USP28	Q96RU2	1077 aa		13.61	□□□□□ -0.23
CPSF4-208	ENST00000452047	PLEKHA5	Q9HAU0	1116 aa		13.61	□□□□□ -0.23
CPSF4-208	ENST00000452047	FOXD4L1	Q9NU39	408 aa		13.61	□□□□□ -0.23
CPSF4-208	ENST00000452047	IGSF9	Q9P2J2	1179 aa		13.61	□□□□□ -0.23
CPSF4-208	ENST00000452047	STK17A	Q9UEE5	414 aa		13.61	□□□□□ -0.23
CPSF4-208	ENST00000452047	DUSP12	Q9UNI6	340 aa		13.61	□□□□□ -0.23
CPSF4-208	ENST00000452047	CACNA1H	O95180	2353 aa		13.6	□□□□□ -0.23
CPSF4-208	ENST00000452047		A0A0B4J269	797 aa		13.6	□□□□□ -0.23
CPSF4-208	ENST00000452047	SYN3	O14994	580 aa		13.6	□□□□□ -0.23
CPSF4-208	ENST00000452047	OGT	O15294	1046 aa		13.6	□□□□□ -0.23
CPSF4-208	ENST00000452047	STX6	O43752	255 aa		13.6	□□□□□ -0.23
CPSF4-208	ENST00000452047	TBCA	O75347	108 aa	Known RBP	13.6	□□□□□ -0.23
CPSF4-208	ENST00000452047	KRT18	P05783	430 aa	Known RBP	13.6	□□□□□ -0.23
CPSF4-208	ENST00000452047	ADRB2	P07550	413 aa		13.6	□□□□□ -0.23
CPSF4-208	ENST00000452047	NMT1	P30419	496 aa	Known RBP	13.6	□□□□□ -0.23
CPSF4-208	ENST00000452047	AVPR2	P30518	371 aa		13.6	□□□□□ -0.23
CPSF4-208	ENST00000452047	MATR3	P43243	847 aa	Known RBP eCLIP	13.6	□□□□□ -0.23
CPSF4-208	ENST00000452047	CEBPZ	Q03701	1054 aa	Known RBP	13.6	□□□□□ -0.23
CPSF4-208	ENST00000452047	MRPL58	Q14197	206 aa	Known RBP	13.6	□□□□□ -0.23
CPSF4-208	ENST00000452047	ZBTB6	Q15916	424 aa		13.6	□□□□□ -0.23
CPSF4-208	ENST00000452047	ENOX2	Q16206	610 aa	Known RBP	13.6	□□□□□ -0.23
CPSF4-208	ENST00000452047	PPM1L	Q5SGD2	360 aa		13.6	□□□□□ -0.23
CPSF4-208	ENST00000452047	GET4	Q7L5D6	327 aa	Predicted RBP	13.6	□□□□□ -0.23
CPSF4-208	ENST00000452047	GRASP	Q7Z6J2	395 aa	Predicted RBP	13.6	□□□□□ -0.23
CPSF4-208	ENST00000452047	TMEM130	Q8N3G9	435 aa		13.6	□□□□□ -0.23
CPSF4-208	ENST00000452047	SUSD3	Q96L08	255 aa		13.6	□□□□□ -0.23
CPSF4-208	ENST00000452047	ST6GALNAC4	Q9H4F1	302 aa		13.6	□□□□□ -0.23
CPSF4-208	ENST00000452047	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	13.6	□□□□□ -0.23
CPSF4-208	ENST00000452047	TSC2	P49815	1807 aa		13.6	□□□□□ -0.23
CPSF4-208	ENST00000452047	WDR27	A2RRH5	827 aa		13.59	□□□□□ -0.23
CPSF4-208	ENST00000452047	CCL16	O15467	120 aa		13.59	□□□□□ -0.23
CPSF4-208	ENST00000452047	PPP1R37	O75864	691 aa		13.59	□□□□□ -0.23
CPSF4-208	ENST00000452047	LAMP2	P13473	410 aa		13.59	□□□□□ -0.23
CPSF4-208	ENST00000452047	LRPAP1	P30533	357 aa		13.59	□□□□□ -0.23
CPSF4-208	ENST00000452047	ABCD1	P33897	745 aa		13.59	□□□□□ -0.23
CPSF4-208	ENST00000452047	NTHL1	P78549	312 aa		13.59	□□□□□ -0.23
CPSF4-208	ENST00000452047	ROR1	Q01973	937 aa		13.59	□□□□□ -0.23
CPSF4-208	ENST00000452047	SPAG1	Q07617	926 aa		13.59	□□□□□ -0.23
CPSF4-208	ENST00000452047	SLC39A14	Q15043	492 aa		13.59	□□□□□ -0.23
CPSF4-208	ENST00000452047	KYAT1	Q16773	422 aa		13.59	□□□□□ -0.23
CPSF4-208	ENST00000452047	UVSSA	Q2YD98	709 aa		13.59	□□□□□ -0.23
CPSF4-208	ENST00000452047	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	13.59	□□□□□ -0.23
CPSF4-208	ENST00000452047	RTL10	Q7L3V2	364 aa		13.59	□□□□□ -0.23
CPSF4-208	ENST00000452047	KRI1	Q8N9T8	703 aa	Known RBP	13.59	□□□□□ -0.23
CPSF4-208	ENST00000452047	RSAD2	Q8WXG1	361 aa		13.59	□□□□□ -0.23
CPSF4-208	ENST00000452047	SNX21	Q969T3	373 aa		13.59	□□□□□ -0.23
CPSF4-208	ENST00000452047	PRRX2	Q99811	253 aa		13.59	□□□□□ -0.23
CPSF4-208	ENST00000452047	ZHX3	Q9H4I2	956 aa		13.59	□□□□□ -0.23
CPSF4-208	ENST00000452047	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	13.59	□□□□□ -0.23
CPSF4-208	ENST00000452047	CCDC39	Q9UFE4	941 aa		13.59	□□□□□ -0.23
CPSF4-208	ENST00000452047	NUB1	Q9Y5A7	615 aa		13.59	□□□□□ -0.23
CPSF4-208	ENST00000452047		A0A087X0B3	334 aa		13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	MYMK	A6NI61	221 aa		13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	LACTBL1	A8MY62	500 aa		13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	TISP43	B9A030	160 aa		13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	ANHX	E9PGG2	379 aa		13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	NARS	O43776	548 aa	Known RBP	13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	XYLB	O75191	536 aa		13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	ABLIM3	O94929	683 aa		13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	CYP3A5	P20815	502 aa		13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	FSHR	P23945	695 aa		13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	MCM4	P33991	863 aa		13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	TXLNA	P40222	546 aa		13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	NASP	P49321	788 aa	Predicted RBP	13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	AARS	P49588	968 aa	Known RBP eCLIP	13.58	□□□□□ -0.24	6e-7	■■■■□ 19.6
CPSF4-208	ENST00000452047	PPP2R3A	Q06190	1150 aa		13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	TCF15	Q12870	199 aa		13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	HTR4	Q13639	388 aa		13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	RRAGB	Q5VZM2	374 aa		13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	DYM	Q7RTS9	669 aa		13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	SFR1	Q86XK3	245 aa		13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	ZNF461	Q8TAF7	563 aa		13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	DDX12P	Q92771	950 aa		13.58	□□□□□ -0.24
CPSF4-208	ENST00000452047	NXPE3	Q969Y0	559 aa		13.58	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms