RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 ZBTB6Q15916 424 aa22.65■■□□□ 1.22
SDC1-205ENST00000447124 PPM1LQ5SGD2 360 aa22.65■■□□□ 1.22
SDC1-205ENST00000447124 AXDND1Q5T1B0 1012 aaPredicted RBP22.65■■□□□ 1.22
SDC1-205ENST00000447124 ANKS3Q6ZW76 656 aa22.65■■□□□ 1.22
SDC1-205ENST00000447124 GRASPQ7Z6J2 395 aaPredicted RBP22.65■■□□□ 1.22
SDC1-205ENST00000447124 RASSF8Q8NHQ8 419 aa22.65■■□□□ 1.22
SDC1-205ENST00000447124 LARP4BQ92615 738 aaKnown RBP22.65■■□□□ 1.22
SDC1-205ENST00000447124 BICD1Q96G01 975 aa22.65■■□□□ 1.22
SDC1-205ENST00000447124 IGSF9Q9P2J2 1179 aa22.65■■□□□ 1.22
SDC1-205ENST00000447124 TUBGCP4Q9UGJ1 667 aa22.65■■□□□ 1.22
SDC1-205ENST00000447124 CITO14578 2027 aa22.65■■□□□ 1.22
SDC1-205ENST00000447124 CCL16O15467 120 aa22.64■■□□□ 1.21
SDC1-205ENST00000447124 NARSO43776 548 aaKnown RBP22.64■■□□□ 1.21
SDC1-205ENST00000447124 FAM189A1O60320 539 aa22.64■■□□□ 1.21
SDC1-205ENST00000447124 CLTAP09496 248 aa22.64■■□□□ 1.21
SDC1-205ENST00000447124 HNRNPA1P09651 372 aaKnown RBP eCLIP22.64■■□□□ 1.21
SDC1-205ENST00000447124 LAMP2P13473 410 aa22.64■■□□□ 1.21
SDC1-205ENST00000447124 MATR3P43243 847 aaKnown RBP eCLIP22.64■■□□□ 1.21
SDC1-205ENST00000447124 TCF15Q12870 199 aa22.64■■□□□ 1.21
SDC1-205ENST00000447124 VARS2Q5ST30 1063 aaKnown RBP22.64■■□□□ 1.21
SDC1-205ENST00000447124 LIN9Q5TKA1 542 aa22.64■■□□□ 1.21
SDC1-205ENST00000447124 SLC39A4Q6P5W5 647 aa22.64■■□□□ 1.21
SDC1-205ENST00000447124 ST13P5Q8NFI4 369 aaPredicted RBP22.64■■□□□ 1.21
SDC1-205ENST00000447124 USP28Q96RU2 1077 aa22.64■■□□□ 1.21
SDC1-205ENST00000447124 ZHX3Q9H4I2 956 aa22.64■■□□□ 1.21
SDC1-205ENST00000447124 PLEKHA5Q9HAU0 1116 aa22.64■■□□□ 1.21
SDC1-205ENST00000447124 CACNA1HO95180 2353 aa22.64■■□□□ 1.21
SDC1-205ENST00000447124 LACTBL1A8MY62 500 aa22.63■■□□□ 1.21
SDC1-205ENST00000447124 K7ENM7 598 aa22.63■■□□□ 1.21
SDC1-205ENST00000447124 KRT18P05783 430 aaKnown RBP22.63■■□□□ 1.21
SDC1-205ENST00000447124 HOXA9P31269 272 aa22.63■■□□□ 1.21
SDC1-205ENST00000447124 LIG4P49917 911 aa22.63■■□□□ 1.21
SDC1-205ENST00000447124 GTF2BQ00403 316 aa22.63■■□□□ 1.21
SDC1-205ENST00000447124 UVSSAQ2YD98 709 aa22.63■■□□□ 1.21
SDC1-205ENST00000447124 GET4Q7L5D6 327 aaPredicted RBP22.63■■□□□ 1.21
SDC1-205ENST00000447124 SLC44A3Q8N4M1 653 aa22.63■■□□□ 1.21
SDC1-205ENST00000447124 SLC7A14Q8TBB6 771 aa22.63■■□□□ 1.21
SDC1-205ENST00000447124 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP22.63■■□□□ 1.212e-7■■■■□ 23.3
SDC1-205ENST00000447124 DUSP12Q9UNI6 340 aa22.63■■□□□ 1.21
SDC1-205ENST00000447124 A0A0B4J269 797 aa22.62■■□□□ 1.21
SDC1-205ENST00000447124 ANKRD63C9JTQ0 380 aa22.62■■□□□ 1.21
SDC1-205ENST00000447124 K7ELQ4 463 aaPredicted RBP22.62■■□□□ 1.21
SDC1-205ENST00000447124 SYN3O14994 580 aa22.62■■□□□ 1.21
SDC1-205ENST00000447124 ADRB2P07550 413 aa22.62■■□□□ 1.21
SDC1-205ENST00000447124 FSHRP23945 695 aa22.62■■□□□ 1.21
SDC1-205ENST00000447124 ENOX2Q16206 610 aaKnown RBP22.62■■□□□ 1.21
SDC1-205ENST00000447124 ZC2HC1CQ53FD0 456 aaPredicted RBP22.62■■□□□ 1.21
SDC1-205ENST00000447124 SLC8B1Q6J4K2 584 aa22.62■■□□□ 1.21
SDC1-205ENST00000447124 ALYREFQ86V81 257 aaKnown RBP22.62■■□□□ 1.21
SDC1-205ENST00000447124 SUSD3Q96L08 255 aa22.62■■□□□ 1.21
SDC1-205ENST00000447124 DNMT3BQ9UBC3 853 aaKnown RBP22.62■■□□□ 1.21
SDC1-205ENST00000447124 NUB1Q9Y5A7 615 aa22.62■■□□□ 1.21
SDC1-205ENST00000447124 ANHXE9PGG2 379 aa22.61■■□□□ 1.21
SDC1-205ENST00000447124 OGTO15294 1046 aa22.61■■□□□ 1.21
SDC1-205ENST00000447124 ABLIM3O94929 683 aa22.61■■□□□ 1.21
SDC1-205ENST00000447124 NPR3P17342 541 aa22.61■■□□□ 1.21
SDC1-205ENST00000447124 LRPAP1P30533 357 aa22.61■■□□□ 1.21
SDC1-205ENST00000447124 GUCY2FP51841 1108 aa22.61■■□□□ 1.21
SDC1-205ENST00000447124 ROR1Q01973 937 aa22.61■■□□□ 1.21
SDC1-205ENST00000447124 SLC39A14Q15043 492 aa22.61■■□□□ 1.21
SDC1-205ENST00000447124 DYMQ7RTS9 669 aa22.61■■□□□ 1.21
SDC1-205ENST00000447124 TMEM105Q8N8V8 129 aa22.61■■□□□ 1.21
SDC1-205ENST00000447124 ZNF461Q8TAF7 563 aa22.61■■□□□ 1.21
SDC1-205ENST00000447124 KIF12Q96FN5 646 aa22.61■■□□□ 1.21
SDC1-205ENST00000447124 PHOX2BQ99453 314 aa22.61■■□□□ 1.21
SDC1-205ENST00000447124 RPP25Q9BUL9 199 aaKnown RBP22.61■■□□□ 1.21
SDC1-205ENST00000447124 PANK2Q9BZ23 570 aa22.61■■□□□ 1.21
SDC1-205ENST00000447124 IKZF4Q9H2S9 585 aa22.61■■□□□ 1.21
SDC1-205ENST00000447124 HCFC1R1Q9NWW0 138 aa22.61■■□□□ 1.21
SDC1-205ENST00000447124 FBXL5Q9UKA1 691 aa22.61■■□□□ 1.21
SDC1-205ENST00000447124 POLIQ9UNA4 740 aa22.61■■□□□ 1.21
SDC1-205ENST00000447124 NOTCH4Q99466 2003 aa22.6■■□□□ 1.21
SDC1-205ENST00000447124 WDR27A2RRH5 827 aa22.6■■□□□ 1.21
SDC1-205ENST00000447124 MYMKA6NI61 221 aa22.6■■□□□ 1.21
SDC1-205ENST00000447124 TISP43B9A030 160 aa22.6■■□□□ 1.21
SDC1-205ENST00000447124 HNRNPDLO14979 420 aaKnown RBP22.6■■□□□ 1.21
SDC1-205ENST00000447124 STX6O43752 255 aa22.6■■□□□ 1.21
SDC1-205ENST00000447124 TBCAO75347 108 aaKnown RBP22.6■■□□□ 1.21
SDC1-205ENST00000447124 SCP2P22307 547 aa22.6■■□□□ 1.21
SDC1-205ENST00000447124 RRAGBQ5VZM2 374 aa22.6■■□□□ 1.21
SDC1-205ENST00000447124 ZNF720Q7Z2F6 126 aa22.6■■□□□ 1.21
SDC1-205ENST00000447124 MAP4K3Q8IVH8 894 aa22.6■■□□□ 1.21
SDC1-205ENST00000447124 ITFG1Q8TB96 612 aa22.6■■□□□ 1.21
SDC1-205ENST00000447124 DDX12PQ92771 950 aa22.6■■□□□ 1.21
SDC1-205ENST00000447124 DNAJC19Q96DA6 116 aa22.6■■□□□ 1.21
SDC1-205ENST00000447124 ST6GALNAC4Q9H4F1 302 aa22.6■■□□□ 1.21
SDC1-205ENST00000447124 CCDC39Q9UFE4 941 aa22.6■■□□□ 1.21
SDC1-205ENST00000447124 MORC2Q9Y6X9 1032 aaPredicted RBP22.6■■□□□ 1.21
SDC1-205ENST00000447124 KMT2EQ8IZD2 1858 aa22.6■■□□□ 1.21
SDC1-205ENST00000447124 A0A087X0B3 334 aa22.59■■□□□ 1.21
SDC1-205ENST00000447124 SEC24AO95486 1093 aa22.59■■□□□ 1.21
SDC1-205ENST00000447124 POU2F2P09086 479 aa22.59■■□□□ 1.21
SDC1-205ENST00000447124 MCM4P33991 863 aa22.59■■□□□ 1.21
SDC1-205ENST00000447124 ARPP19P56211 112 aa22.59■■□□□ 1.21
SDC1-205ENST00000447124 HTR4Q13639 388 aa22.59■■□□□ 1.21
SDC1-205ENST00000447124 POTEHQ6S545 545 aa22.59■■□□□ 1.21
SDC1-205ENST00000447124 KRI1Q8N9T8 703 aaKnown RBP22.59■■□□□ 1.21
SDC1-205ENST00000447124 NXPE3Q969Y0 559 aa22.59■■□□□ 1.21
SDC1-205ENST00000447124 PRRX2Q99811 253 aa22.59■■□□□ 1.21
SDC1-205ENST00000447124 MSTO1Q9BUK6 570 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms