RNA–Protein interactions for RNA: ENST00000440514.1

CPSF4-205, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 578 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-205ENST00000440514 ADAM15Q13444 863 aa19.58■□□□□ 0.72
CPSF4-205ENST00000440514 KCNB1Q14721 858 aa19.58■□□□□ 0.72
CPSF4-205ENST00000440514 TMEM132DQ14C87 1099 aa19.58■□□□□ 0.72
CPSF4-205ENST00000440514 ZBTB6Q15916 424 aa19.58■□□□□ 0.72
CPSF4-205ENST00000440514 RTP2Q5QGT7 225 aa19.58■□□□□ 0.72
CPSF4-205ENST00000440514 DCLRE1AQ6PJP8 1040 aa19.58■□□□□ 0.72
CPSF4-205ENST00000440514 HS2ST1Q7LGA3 356 aa19.58■□□□□ 0.72
CPSF4-205ENST00000440514 CBWD2Q8IUF1 395 aa19.58■□□□□ 0.72
CPSF4-205ENST00000440514 CD302Q8IX05 232 aa19.58■□□□□ 0.72
CPSF4-205ENST00000440514 EFCAB13Q8IY85 973 aa19.58■□□□□ 0.72
CPSF4-205ENST00000440514 DDX27Q96GQ7 796 aaKnown RBP19.58■□□□□ 0.72
CPSF4-205ENST00000440514 FAM84AQ96KN4 292 aa19.58■□□□□ 0.72
CPSF4-205ENST00000440514 MRPL17Q9NRX2 175 aaKnown RBP19.58■□□□□ 0.72
CPSF4-205ENST00000440514 BARX2Q9UMQ3 279 aaPredicted RBP19.58■□□□□ 0.72
CPSF4-205ENST00000440514 IRAK3Q9Y616 596 aa19.58■□□□□ 0.72
CPSF4-205ENST00000440514 PPEF2O14830 753 aa19.57■□□□□ 0.72
CPSF4-205ENST00000440514 CLASP2O75122 1294 aaKnown RBP19.57■□□□□ 0.72
CPSF4-205ENST00000440514 IL18RAPO95256 599 aa19.57■□□□□ 0.72
CPSF4-205ENST00000440514 NDUFV1P49821 464 aa19.57■□□□□ 0.72
CPSF4-205ENST00000440514 KCNQ1P51787 676 aa19.57■□□□□ 0.72
CPSF4-205ENST00000440514 DSG1Q02413 1049 aa19.57■□□□□ 0.72
CPSF4-205ENST00000440514 USP41Q3LFD5 358 aa19.57■□□□□ 0.72
CPSF4-205ENST00000440514 FAM171A1Q5VUB5 890 aa19.57■□□□□ 0.72
CPSF4-205ENST00000440514 KIAA0319Q5VV43 1072 aa19.57■□□□□ 0.72
CPSF4-205ENST00000440514 KIAA1841Q6NSI8 718 aa19.57■□□□□ 0.72
CPSF4-205ENST00000440514 SMYD4Q8IYR2 804 aaPredicted RBP19.57■□□□□ 0.72
CPSF4-205ENST00000440514 RIN2Q8WYP3 895 aaPredicted RBP19.57■□□□□ 0.72
CPSF4-205ENST00000440514 CDCA3Q99618 268 aaPredicted RBP19.57■□□□□ 0.72
CPSF4-205ENST00000440514 ASB7Q9H672 318 aa19.57■□□□□ 0.72
CPSF4-205ENST00000440514 CHST7Q9NS84 486 aa19.57■□□□□ 0.72
CPSF4-205ENST00000440514 MAPK8IP1Q9UQF2 711 aa19.57■□□□□ 0.72
CPSF4-205ENST00000440514 DERAQ9Y315 318 aa19.57■□□□□ 0.72
CPSF4-205ENST00000440514 PLXNA3P51805 1871 aa19.56■□□□□ 0.72
CPSF4-205ENST00000440514 SPTBN5Q9NRC6 3674 aaKnown RBP19.56■□□□□ 0.72
CPSF4-205ENST00000440514 KIAA0391O15091 583 aaKnown RBP19.56■□□□□ 0.72
CPSF4-205ENST00000440514 XPOTO43592 962 aaKnown RBP19.56■□□□□ 0.72
CPSF4-205ENST00000440514 NCK2O43639 380 aa19.56■□□□□ 0.72
CPSF4-205ENST00000440514 LILRB3O75022 631 aa19.56■□□□□ 0.72
CPSF4-205ENST00000440514 CNPP09543 421 aaKnown RBP19.56■□□□□ 0.72
CPSF4-205ENST00000440514 CYP3A5P20815 502 aa19.56■□□□□ 0.72
CPSF4-205ENST00000440514 LRPAP1P30533 357 aa19.56■□□□□ 0.72
CPSF4-205ENST00000440514 RPL9P32969 192 aaKnown RBP19.56■□□□□ 0.72
CPSF4-205ENST00000440514 POU5F1Q01860 360 aaKnown RBP19.56■□□□□ 0.72
CPSF4-205ENST00000440514 CLUL1Q15846 466 aa19.56■□□□□ 0.72
CPSF4-205ENST00000440514 SPATA1Q5VX52 437 aa19.56■□□□□ 0.72
CPSF4-205ENST00000440514 PRSS55Q6UWB4 352 aaPredicted RBP19.56■□□□□ 0.72
CPSF4-205ENST00000440514 CEP57Q86XR8 500 aa19.56■□□□□ 0.72
CPSF4-205ENST00000440514 BEST2Q8NFU1 509 aa19.56■□□□□ 0.72
CPSF4-205ENST00000440514 KLHL5Q96PQ7 755 aa19.56■□□□□ 0.72
CPSF4-205ENST00000440514 KCTD10Q9H3F6 313 aa19.56■□□□□ 0.72
CPSF4-205ENST00000440514 PDE11AQ9HCR9 933 aa19.56■□□□□ 0.72
CPSF4-205ENST00000440514 C2CD2Q9Y426 696 aa19.56■□□□□ 0.72
CPSF4-205ENST00000440514 RPL17P18621 184 aaKnown RBP19.55■□□□□ 0.72
CPSF4-205ENST00000440514 TKTP29401 623 aaKnown RBP19.55■□□□□ 0.72
CPSF4-205ENST00000440514 MCM4P33991 863 aa19.55■□□□□ 0.72
CPSF4-205ENST00000440514 SNRPFP62306 86 aaKnown RBP19.55■□□□□ 0.72
CPSF4-205ENST00000440514 MRPS5P82675 430 aaKnown RBP19.55■□□□□ 0.72
CPSF4-205ENST00000440514 ELAVL2Q12926 359 aaKnown RBP19.55■□□□□ 0.72
CPSF4-205ENST00000440514 KCNC3Q14003 757 aa19.55■□□□□ 0.72
CPSF4-205ENST00000440514 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.55■□□□□ 0.72
CPSF4-205ENST00000440514 CLEC17AQ6ZS10 378 aa19.55■□□□□ 0.72
CPSF4-205ENST00000440514 C12orf56Q8IXR9 622 aa19.55■□□□□ 0.72
CPSF4-205ENST00000440514 ATXN2LQ8WWM7 1075 aaKnown RBP19.55■□□□□ 0.72
CPSF4-205ENST00000440514 SMARCE1Q969G3 411 aa19.55■□□□□ 0.72
CPSF4-205ENST00000440514 TSPAN18Q96SJ8 248 aa19.55■□□□□ 0.72
CPSF4-205ENST00000440514 TTPALQ9BTX7 342 aa19.55■□□□□ 0.72
CPSF4-205ENST00000440514 EMILIN2Q9BXX0 1053 aa19.55■□□□□ 0.72
CPSF4-205ENST00000440514 CLEC1BQ9P126 229 aa19.55■□□□□ 0.72
CPSF4-205ENST00000440514 HOOK1Q9UJC3 728 aaKnown RBP19.55■□□□□ 0.72
CPSF4-205ENST00000440514 NUB1Q9Y5A7 615 aa19.55■□□□□ 0.72
CPSF4-205ENST00000440514 PCDHA5Q9Y5H7 936 aa19.55■□□□□ 0.72
CPSF4-205ENST00000440514 HCFC2Q9Y5Z7 792 aa19.55■□□□□ 0.72
CPSF4-205ENST00000440514 PTPRJQ12913 1337 aa19.54■□□□□ 0.72
CPSF4-205ENST00000440514 TSC2P49815 1807 aa19.54■□□□□ 0.72
CPSF4-205ENST00000440514 TEX28O15482 410 aa19.54■□□□□ 0.72
CPSF4-205ENST00000440514 SMC2O95347 1197 aa19.54■□□□□ 0.72
CPSF4-205ENST00000440514 EPCAMP16422 314 aa19.54■□□□□ 0.72
CPSF4-205ENST00000440514 SNRNP35Q16560 246 aaKnown RBP19.54■□□□□ 0.72
CPSF4-205ENST00000440514 LMBRD2Q68DH5 695 aaPredicted RBP19.54■□□□□ 0.72
CPSF4-205ENST00000440514 GLYCTKQ8IVS8 523 aa19.54■□□□□ 0.72
CPSF4-205ENST00000440514 XXYLT1Q8NBI6 393 aa19.54■□□□□ 0.72
CPSF4-205ENST00000440514 RDH13Q8NBN7 331 aa19.54■□□□□ 0.72
CPSF4-205ENST00000440514 SPATA20Q8TB22 786 aa19.54■□□□□ 0.72
CPSF4-205ENST00000440514 PIK3R5Q8WYR1 880 aa19.54■□□□□ 0.72
CPSF4-205ENST00000440514 FBXL18Q96ME1 805 aa19.54■□□□□ 0.72
CPSF4-205ENST00000440514 RMND1Q9NWS8 449 aa19.54■□□□□ 0.72
CPSF4-205ENST00000440514 CGNQ9P2M7 1197 aaKnown RBP19.54■□□□□ 0.72
CPSF4-205ENST00000440514 SSX2IPQ9Y2D8 614 aa19.54■□□□□ 0.72
CPSF4-205ENST00000440514 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.54■□□□□ 0.72
CPSF4-205ENST00000440514 FSD2A1L4K1 749 aa19.53■□□□□ 0.72
CPSF4-205ENST00000440514 ZNF233A6NK53 670 aa19.53■□□□□ 0.72
CPSF4-205ENST00000440514 TRAPPC3O43617 180 aa19.53■□□□□ 0.72
CPSF4-205ENST00000440514 FGFR3P22607 806 aa19.53■□□□□ 0.72
CPSF4-205ENST00000440514 KLRC2P26717 231 aa19.53■□□□□ 0.72
CPSF4-205ENST00000440514 TFAMQ00059 246 aaKnown RBP19.53■□□□□ 0.72
CPSF4-205ENST00000440514 PSMD5Q16401 504 aa19.53■□□□□ 0.72
CPSF4-205ENST00000440514 LEXMQ3ZCV2 418 aa19.53■□□□□ 0.72
CPSF4-205ENST00000440514 C9orf57Q5W0N0 161 aa19.53■□□□□ 0.72
CPSF4-205ENST00000440514 GUF1Q8N442 669 aaKnown RBP19.53■□□□□ 0.72
CPSF4-205ENST00000440514 GOLGA5Q8TBA6 731 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms