RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 TIGD2Q4W5G0 525 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 C19orf54Q5BKX5 351 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 PRAMEF14Q5SWL7 426 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 ANKS6Q68DC2 871 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 CYB5RLQ6IPT4 315 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 EFCAB12Q6NXP0 572 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 FAM180AQ6UWF9 173 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 ZNF627Q7L945 461 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 MRGPRGQ86SM5 289 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 PQLC1Q8N2U9 271 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 AMER2Q8N7J2 671 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 OR10H5Q8NGA6 315 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 PROKR1Q8TCW9 393 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 TFAP2CQ92754 450 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 C1GALT1C1Q96EU7 318 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 CLPTM1LQ96KA5 538 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 PHACTR3Q96KR7 559 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 NT5C1BQ96P26 610 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 TTPALQ9BTX7 342 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 KCNH6Q9H252 994 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 IKZF4Q9H2S9 585 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 ZNF768Q9H5H4 540 aaKnown RBP4.49□□□□□ -1.69
VPS41-207ENST00000439468 ARMT1Q9H993 441 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 ARNT2Q9HBZ2 717 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 PCDHA3Q9Y5H8 950 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 NR2E3Q9Y5X4 410 aa4.49□□□□□ -1.69
VPS41-207ENST00000439468 TMEM191CA6NGB0 347 aa4.48□□□□□ -1.69
VPS41-207ENST00000439468 APAF1O14727 1248 aa4.48□□□□□ -1.69
VPS41-207ENST00000439468 ERC2O15083 957 aa4.48□□□□□ -1.69
VPS41-207ENST00000439468 RAMP2O60895 175 aa4.48□□□□□ -1.69
VPS41-207ENST00000439468 CAND2O75155 1236 aa4.48□□□□□ -1.69
VPS41-207ENST00000439468 GASTP01350 101 aa4.48□□□□□ -1.69
VPS41-207ENST00000439468 PCSK1P29120 753 aa4.48□□□□□ -1.69
VPS41-207ENST00000439468 ECHS1P30084 290 aa4.48□□□□□ -1.69
VPS41-207ENST00000439468 ZNF280AP59817 542 aaPredicted RBP4.48□□□□□ -1.69
VPS41-207ENST00000439468 RNASE9P60153 205 aaKnown RBP4.48□□□□□ -1.69
VPS41-207ENST00000439468 NHLH2Q02577 135 aa4.48□□□□□ -1.69
VPS41-207ENST00000439468 PTPAQ15257 358 aa4.48□□□□□ -1.69
VPS41-207ENST00000439468 METTL24Q5JXM2 366 aa4.48□□□□□ -1.69
VPS41-207ENST00000439468 LY6G5CQ5SRR4 150 aa4.48□□□□□ -1.69
VPS41-207ENST00000439468 SYCP2LQ5T4T6 812 aa4.48□□□□□ -1.69
VPS41-207ENST00000439468 NPNTQ6UXI9 565 aa4.48□□□□□ -1.69
VPS41-207ENST00000439468 MIGA2Q7L4E1 593 aa4.48□□□□□ -1.69
VPS41-207ENST00000439468 CCAR1Q8IX12 1150 aaKnown RBP4.48□□□□□ -1.69
VPS41-207ENST00000439468 DRC7Q8IY82 874 aa4.48□□□□□ -1.69
VPS41-207ENST00000439468 TRMT2AQ8IZ69 625 aaKnown RBP4.48□□□□□ -1.69
VPS41-207ENST00000439468 SH2D3CQ8N5H7 860 aa4.48□□□□□ -1.69
VPS41-207ENST00000439468 FAM156AQ8NDB6 213 aa4.48□□□□□ -1.69
VPS41-207ENST00000439468 PLBD2Q8NHP8 589 aa4.48□□□□□ -1.69
VPS41-207ENST00000439468 CEP95Q96GE4 821 aa4.48□□□□□ -1.69
VPS41-207ENST00000439468 MYOCQ99972 504 aa4.48□□□□□ -1.69
VPS41-207ENST00000439468 PRDM11Q9NQV5 511 aa4.48□□□□□ -1.69
VPS41-207ENST00000439468 C1orf112Q9NSG2 853 aa4.48□□□□□ -1.69
VPS41-207ENST00000439468 ACTL7AQ9Y615 435 aa4.48□□□□□ -1.69
VPS41-207ENST00000439468 MYBBP1AQ9BQG0 1328 aaKnown RBP4.47□□□□□ -1.69
VPS41-207ENST00000439468 GRXCR1A8MXD5 290 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 LEFTY2O00292 366 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 B3GALT2O43825 422 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 PPFIA4O75335 1185 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 TUSC2O75896 110 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 FTLP02792 175 aaPredicted RBP4.47□□□□□ -1.69
VPS41-207ENST00000439468 ITGB1P05556 798 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 KRT18P05783 430 aaKnown RBP4.47□□□□□ -1.69
VPS41-207ENST00000439468 LAG3P18627 525 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 MGAT1P26572 445 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 HTR1BP28222 390 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 CRHR1P34998 444 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 PTTG1IPP53801 180 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 RAP2BP61225 183 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 COBLL1Q53SF7 1204 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 CCDC157Q569K6 752 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 MFSD14BQ5SR56 506 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 PPP4R4Q6NUP7 873 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 SWSAP1Q6NVH7 229 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 LRRC55Q6ZSA7 311 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 GDF7Q7Z4P5 450 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 MRGPREQ86SM8 312 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 LDLRAD3Q86YD5 345 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 DENND1CQ8IV53 801 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 OR7D4Q8NG98 312 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 ZFP28Q8NHY6 868 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 NSUN6Q8TEA1 469 aaKnown RBP4.47□□□□□ -1.69
VPS41-207ENST00000439468 TMX3Q96JJ7 454 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 MRGPRX4Q96LA9 322 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 DCLRE1CQ96SD1 692 aaKnown RBP4.47□□□□□ -1.69
VPS41-207ENST00000439468 PRRX2Q99811 253 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 MLST8Q9BVC4 326 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 B3GNT5Q9BYG0 378 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 SENP6Q9GZR1 1112 aaPredicted RBP4.47□□□□□ -1.69
VPS41-207ENST00000439468 TDP1Q9NUW8 608 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 STAP2Q9UGK3 403 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 AJAP1Q9UKB5 411 aaPredicted RBP4.47□□□□□ -1.69
VPS41-207ENST00000439468 FZD1Q9UP38 647 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 RUVBL1Q9Y265 456 aaKnown RBP4.47□□□□□ -1.69
VPS41-207ENST00000439468 PCDHGB6Q9Y5F9 930 aa4.47□□□□□ -1.69
VPS41-207ENST00000439468 TBKBP1A7MCY6 615 aa4.46□□□□□ -1.7
VPS41-207ENST00000439468 FAM171A2A8MVW0 826 aa4.46□□□□□ -1.7
VPS41-207ENST00000439468 AHRRA9YTQ3 701 aa4.46□□□□□ -1.7
VPS41-207ENST00000439468 H3BML4 177 aa4.46□□□□□ -1.7
VPS41-207ENST00000439468 TPP1O14773 563 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms