RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 APOL5Q9BWW9 433 aa16.18■□□□□ 0.18
PTPRF-206ENST00000429895 NDE1Q9NXR1 346 aa16.18■□□□□ 0.18
PTPRF-206ENST00000429895 ANO9A1A5B4 782 aa16.18■□□□□ 0.18
PTPRF-206ENST00000429895 FAM187AA6NFU0 413 aa16.18■□□□□ 0.18
PTPRF-206ENST00000429895 CAPZA2P47755 286 aa16.18■□□□□ 0.18
PTPRF-206ENST00000429895 PMS1P54277 932 aaKnown RBP16.18■□□□□ 0.18
PTPRF-206ENST00000429895 SNX17Q15036 470 aa16.18■□□□□ 0.18
PTPRF-206ENST00000429895 LRRC23Q53EV4 343 aaPredicted RBP16.18■□□□□ 0.18
PTPRF-206ENST00000429895 RNPC3Q96LT9 517 aaKnown RBP16.18■□□□□ 0.18
PTPRF-206ENST00000429895 ETNK1Q9HBU6 452 aa16.18■□□□□ 0.18
PTPRF-206ENST00000429895 ZNRF3Q9ULT6 936 aa16.18■□□□□ 0.18
PTPRF-206ENST00000429895 EPB42P16452 691 aa16.18■□□□□ 0.18
PTPRF-206ENST00000429895 USP10Q14694 798 aaKnown RBP16.18■□□□□ 0.18
PTPRF-206ENST00000429895 MAPRE2Q15555 327 aa16.18■□□□□ 0.18
PTPRF-206ENST00000429895 MMS22LQ6ZRQ5 1243 aa16.18■□□□□ 0.18
PTPRF-206ENST00000429895 GUF1Q8N442 669 aaKnown RBP16.18■□□□□ 0.18
PTPRF-206ENST00000429895 LRRC71Q8N4P6 559 aa16.18■□□□□ 0.18
PTPRF-206ENST00000429895 SYNMO15061 1565 aa16.18■□□□□ 0.18
PTPRF-206ENST00000429895 PBRM1Q86U86 1689 aa16.18■□□□□ 0.18
PTPRF-206ENST00000429895 NCOA4Q13772 614 aa16.18■□□□□ 0.18
PTPRF-206ENST00000429895 MS4A14Q96JA4 679 aa16.18■□□□□ 0.18
PTPRF-206ENST00000429895 PARK7Q99497 189 aaKnown RBP16.18■□□□□ 0.18
PTPRF-206ENST00000429895 TMEM117Q9H0C3 514 aa16.18■□□□□ 0.18
PTPRF-206ENST00000429895 FDX1P10109 184 aa16.18■□□□□ 0.18
PTPRF-206ENST00000429895 KRT4P19013 534 aa16.18■□□□□ 0.18
PTPRF-206ENST00000429895 ORC2Q13416 577 aaPredicted RBP16.18■□□□□ 0.18
PTPRF-206ENST00000429895 UBA3Q8TBC4 463 aa16.18■□□□□ 0.18
PTPRF-206ENST00000429895 ZNF263O14978 683 aa16.17■□□□□ 0.18
PTPRF-206ENST00000429895 SDE2Q6IQ49 451 aa16.17■□□□□ 0.18
PTPRF-206ENST00000429895 ZNF280CQ8ND82 737 aa16.17■□□□□ 0.18
PTPRF-206ENST00000429895 NEDD1Q8NHV4 660 aa16.17■□□□□ 0.18
PTPRF-206ENST00000429895 PRMT1Q99873 361 aaKnown RBP16.17■□□□□ 0.18
PTPRF-206ENST00000429895 XPO7Q9UIA9 1087 aaKnown RBP16.17■□□□□ 0.18
PTPRF-206ENST00000429895 PCDHB7Q9Y5E2 793 aa16.17■□□□□ 0.18
PTPRF-206ENST00000429895 SOAT1P35610 550 aa16.17■□□□□ 0.18
PTPRF-206ENST00000429895 EMC2Q15006 297 aa16.17■□□□□ 0.18
PTPRF-206ENST00000429895 ANO5Q75V66 913 aa16.17■□□□□ 0.18
PTPRF-206ENST00000429895 STKLD1Q8NE28 680 aa16.17■□□□□ 0.18
PTPRF-206ENST00000429895 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.17■□□□□ 0.184e-7■■□□□ 12.8
PTPRF-206ENST00000429895 VCAM1P19320 739 aa16.17■□□□□ 0.18
PTPRF-206ENST00000429895 NLRP14Q86W24 1093 aa16.17■□□□□ 0.18
PTPRF-206ENST00000429895 RCOR2Q8IZ40 523 aa16.17■□□□□ 0.18
PTPRF-206ENST00000429895 TBC1D16Q8TBP0 767 aa16.17■□□□□ 0.18
PTPRF-206ENST00000429895 MED15Q96RN5 788 aa16.17■□□□□ 0.18
PTPRF-206ENST00000429895 ZC4H2Q9NQZ6 224 aa16.17■□□□□ 0.18
PTPRF-206ENST00000429895 LIMA1Q9UHB6 759 aaKnown RBP16.17■□□□□ 0.18
PTPRF-206ENST00000429895 DMTNQ08495 405 aa16.17■□□□□ 0.18
PTPRF-206ENST00000429895 CYTH1Q15438 398 aa16.17■□□□□ 0.18
PTPRF-206ENST00000429895 XKR3Q5GH77 459 aa16.17■□□□□ 0.18
PTPRF-206ENST00000429895 RAB6BQ9NRW1 208 aa16.17■□□□□ 0.18
PTPRF-206ENST00000429895 CACNA2D2Q9NY47 1150 aa16.17■□□□□ 0.18
PTPRF-206ENST00000429895 MTHFD1LQ6UB35 978 aa16.17■□□□□ 0.18
PTPRF-206ENST00000429895 TMCO5AQ8N6Q1 288 aa16.17■□□□□ 0.18
PTPRF-206ENST00000429895 PHF21AQ96BD5 680 aa16.17■□□□□ 0.18
PTPRF-206ENST00000429895 SPON1Q9HCB6 807 aa16.17■□□□□ 0.18
PTPRF-206ENST00000429895 PTRHD1Q6GMV3 140 aaKnown RBP16.16■□□□□ 0.18
PTPRF-206ENST00000429895 ARMC6Q6NXE6 501 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 SHC4Q6S5L8 630 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 SLC35G2Q8TBE7 412 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 TEX13BQ9BXU2 312 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 TASP1Q9H6P5 420 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 HDAC4P56524 1084 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 SARM1Q6SZW1 724 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 GJD4Q96KN9 370 aaPredicted RBP16.16■□□□□ 0.18
PTPRF-206ENST00000429895 SENP7Q9BQF6 1050 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 OSBPL5Q9H0X9 879 aaPredicted RBP16.16■□□□□ 0.18
PTPRF-206ENST00000429895 TRABDQ9H4I3 376 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 GGA3Q9NZ52 723 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 DAGLAQ9Y4D2 1042 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 CHGBP05060 677 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 NUMBP49757 651 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 RBBP8NLQ8NC74 664 aaPredicted RBP16.16■□□□□ 0.18
PTPRF-206ENST00000429895 IPMKQ8NFU5 416 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 REEP2Q9BRK0 252 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 STOML1Q9UBI4 398 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 MARCOQ9UEW3 520 aaPredicted RBP16.16■□□□□ 0.18
PTPRF-206ENST00000429895 CDK12Q9NYV4 1490 aaPredicted RBP16.16■□□□□ 0.18
PTPRF-206ENST00000429895 USP27XA6NNY8 438 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 ZNF185O15231 689 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 CCDC22O60826 627 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 ATP2C1P98194 919 aaPredicted RBP16.16■□□□□ 0.18
PTPRF-206ENST00000429895 DNAJC7Q99615 494 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 YIPF3Q9GZM5 350 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 C20orf96Q9NUD7 363 aaPredicted RBP16.16■□□□□ 0.18
PTPRF-206ENST00000429895 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.16■□□□□ 0.18
PTPRF-206ENST00000429895 FAM32AQ9Y421 112 aaKnown RBP16.16■□□□□ 0.18
PTPRF-206ENST00000429895 OVOS2A0A0G2JMS6 1433 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 OVOS2A0A0J9YW53 1432 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 OVOS2Q6IE36 1432 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 MTM1Q13496 603 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 ZRANB3Q5FWF4 1079 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 C12orf60Q5U649 245 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 PCMTD2Q9NV79 361 aa16.16■□□□□ 0.18
PTPRF-206ENST00000429895 ACTN3Q08043 901 aaPredicted RBP16.15■□□□□ 0.18
PTPRF-206ENST00000429895 GOLGA7BQ2TAP0 167 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 L3MBTL3Q96JM7 780 aaPredicted RBP16.15■□□□□ 0.18
PTPRF-206ENST00000429895 ZFP42Q96MM3 310 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 PFASO15067 1338 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 ARHGEF9O43307 516 aa16.15■□□□□ 0.18
PTPRF-206ENST00000429895 MZF1P28698 734 aaPredicted RBP16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms