RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 FTH1P19P0C7X4 201 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 TYRP14679 529 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 SLC6A2P23975 617 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 ACRV1P26436 265 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 PRDX5P30044 214 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 SLC6A4P31645 630 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 APOBEC3AP31941 199 aaPredicted RBP5.26□□□□□ -1.57
USP40-204ENST00000427947 CHN2P52757 468 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 RAB1AP62820 205 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 ADAM17P78536 824 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 EFEMP1Q12805 493 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 PLS1Q14651 629 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 LLGL1Q15334 1064 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 CCDC93Q567U6 631 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 NAIF1Q69YI7 327 aaPredicted RBP5.26□□□□□ -1.57
USP40-204ENST00000427947 PPP4R4Q6NUP7 873 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 NPNTQ6UXI9 565 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 HTR3DQ70Z44 454 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 MED25Q71SY5 747 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 DGKHQ86XP1 1220 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 KRTAP1-3Q8IUG1 177 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 PLBD2Q8NHP8 589 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 TIFAQ96CG3 184 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 MTFMTQ96DP5 389 aaKnown RBP5.26□□□□□ -1.57
USP40-204ENST00000427947 C1orf43Q9BWL3 253 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 KRTAP3-1Q9BYR8 98 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 GSTO2Q9H4Y5 243 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 FAM204AQ9H8W3 233 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 SLAMF7Q9NQ25 335 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 GNL3LQ9NVN8 582 aaKnown RBP5.26□□□□□ -1.57
USP40-204ENST00000427947 PNPOQ9NVS9 261 aa5.26□□□□□ -1.57
USP40-204ENST00000427947 EIF2B4Q9UI10 523 aaKnown RBP5.26□□□□□ -1.57
USP40-204ENST00000427947 XDHP47989 1333 aa5.25□□□□□ -1.57
USP40-204ENST00000427947 A6NNZ2 444 aa5.25□□□□□ -1.57
USP40-204ENST00000427947 GNAI3P08754 354 aa5.25□□□□□ -1.57
USP40-204ENST00000427947 ZNF20P17024 532 aa5.25□□□□□ -1.57
USP40-204ENST00000427947 PIK3CGP48736 1102 aa5.25□□□□□ -1.57
USP40-204ENST00000427947 GNAI1P63096 354 aa5.25□□□□□ -1.57
USP40-204ENST00000427947 NKX6-1P78426 367 aaPredicted RBP5.25□□□□□ -1.57
USP40-204ENST00000427947 NHLH2Q02577 135 aa5.25□□□□□ -1.57
USP40-204ENST00000427947 SPATS1Q496A3 300 aa5.25□□□□□ -1.57
USP40-204ENST00000427947 ANO6Q4KMQ2 910 aa5.25□□□□□ -1.57
USP40-204ENST00000427947 SPDYAQ5MJ70 313 aa5.25□□□□□ -1.57
USP40-204ENST00000427947 CCDC181Q5TID7 509 aa5.25□□□□□ -1.57
USP40-204ENST00000427947 PRRT2Q7Z6L0 340 aaPredicted RBP5.25□□□□□ -1.57
USP40-204ENST00000427947 PPP1R3BQ86XI6 285 aa5.25□□□□□ -1.57
USP40-204ENST00000427947 FAM90A1Q86YD7 464 aa5.25□□□□□ -1.57
USP40-204ENST00000427947 FITM2Q8N6M3 262 aa5.25□□□□□ -1.57
USP40-204ENST00000427947 IL17RDQ8NFM7 739 aa5.25□□□□□ -1.57
USP40-204ENST00000427947 TNPO1Q92973 898 aaKnown RBP5.25□□□□□ -1.57
USP40-204ENST00000427947 TMEM60Q9H2L4 133 aa5.25□□□□□ -1.57
USP40-204ENST00000427947 SIDT1Q9NXL6 827 aaKnown RBP5.25□□□□□ -1.57
USP40-204ENST00000427947 FAM30AQ9NZY2 134 aa5.25□□□□□ -1.57
USP40-204ENST00000427947 STAP2Q9UGK3 403 aa5.25□□□□□ -1.57
USP40-204ENST00000427947 SORCS3Q9UPU3 1222 aa5.25□□□□□ -1.57
USP40-204ENST00000427947 PCDHA1Q9Y5I3 950 aa5.25□□□□□ -1.57
USP40-204ENST00000427947 A0A088AWK7 358 aa5.24□□□□□ -1.57
USP40-204ENST00000427947 TPP1O14773 563 aa5.24□□□□□ -1.57
USP40-204ENST00000427947 PRC1O43663 620 aa5.24□□□□□ -1.57
USP40-204ENST00000427947 GNALP38405 381 aa5.24□□□□□ -1.57
USP40-204ENST00000427947 PHKA1P46020 1223 aa5.24□□□□□ -1.57
USP40-204ENST00000427947 USP14P54578 494 aa5.24□□□□□ -1.57
USP40-204ENST00000427947 RNASE9P60153 205 aaKnown RBP5.24□□□□□ -1.57
USP40-204ENST00000427947 CDSNQ15517 529 aa5.24□□□□□ -1.57
USP40-204ENST00000427947 USP39Q53GS9 565 aaKnown RBP5.24□□□□□ -1.57
USP40-204ENST00000427947 UTP14CQ5TAP6 766 aaKnown RBP5.24□□□□□ -1.57
USP40-204ENST00000427947 CCDC149Q6ZUS6 474 aa5.24□□□□□ -1.57
USP40-204ENST00000427947 ZNF365Q70YC5 407 aa5.24□□□□□ -1.57
USP40-204ENST00000427947 NOL8Q76FK4 1167 aaKnown RBP5.24□□□□□ -1.57
USP40-204ENST00000427947 COL23A1Q86Y22 540 aaPredicted RBP5.24□□□□□ -1.57
USP40-204ENST00000427947 TBC1D15Q8TC07 691 aa5.24□□□□□ -1.57
USP40-204ENST00000427947 BRIX1Q8TDN6 353 aaKnown RBP5.24□□□□□ -1.57
USP40-204ENST00000427947 NT5C1BQ96P26 610 aa5.24□□□□□ -1.57
USP40-204ENST00000427947 C1QTNF3Q9BXJ4 246 aa5.24□□□□□ -1.57
USP40-204ENST00000427947 REXO4Q9GZR2 422 aaKnown RBP5.24□□□□□ -1.57
USP40-204ENST00000427947 MRPL46Q9H2W6 279 aaKnown RBP5.24□□□□□ -1.57
USP40-204ENST00000427947 GEMIN8Q9NWZ8 242 aaKnown RBP5.24□□□□□ -1.57
USP40-204ENST00000427947 JKAMPQ9P055 326 aa5.24□□□□□ -1.57
USP40-204ENST00000427947 TSC22D4Q9Y3Q8 395 aa5.24□□□□□ -1.57
USP40-204ENST00000427947 USP15Q9Y4E8 981 aaPredicted RBP5.24□□□□□ -1.57
USP40-204ENST00000427947 TESMINQ9Y4I5 508 aa5.24□□□□□ -1.57
USP40-204ENST00000427947 CAPN8A6NHC0 703 aa5.23□□□□□ -1.57
USP40-204ENST00000427947 SLC43A1O75387 559 aa5.23□□□□□ -1.57
USP40-204ENST00000427947 RECQL4O94761 1208 aa5.23□□□□□ -1.57
USP40-204ENST00000427947 AGFG2O95081 481 aa5.23□□□□□ -1.57
USP40-204ENST00000427947 PRSS23O95084 383 aa5.23□□□□□ -1.57
USP40-204ENST00000427947 SCAF4O95104 1147 aaKnown RBP5.23□□□□□ -1.57
USP40-204ENST00000427947 AHSGP02765 367 aa5.23□□□□□ -1.57
USP40-204ENST00000427947 AGFG1P52594 562 aaKnown RBP5.23□□□□□ -1.57
USP40-204ENST00000427947 PTTG1IPP53801 180 aa5.23□□□□□ -1.57
USP40-204ENST00000427947 TBX4P57082 545 aa5.23□□□□□ -1.57
USP40-204ENST00000427947 FGL2Q14314 439 aa5.23□□□□□ -1.57
USP40-204ENST00000427947 FAM102AQ5T9C2 384 aaPredicted RBP5.23□□□□□ -1.57
USP40-204ENST00000427947 LCE4AQ5TA78 99 aa5.23□□□□□ -1.57
USP40-204ENST00000427947 SRGAP1Q7Z6B7 1085 aa5.23□□□□□ -1.57
USP40-204ENST00000427947 TMPRSS6Q8IU80 811 aa5.23□□□□□ -1.57
USP40-204ENST00000427947 C1orf210Q8IVY1 113 aa5.23□□□□□ -1.57
USP40-204ENST00000427947 KIAA0319LQ8IZA0 1049 aa5.23□□□□□ -1.57
USP40-204ENST00000427947 AOPEPQ8N6M6 819 aa5.23□□□□□ -1.57
USP40-204ENST00000427947 CELF5Q8N6W0 485 aaKnown RBP5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms