RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 TCEAL9Q9UHQ7 104 aa11.72□□□□□ -0.53
LIMS1-207ENST00000422797 SLC24A2Q9UI40 661 aa11.72□□□□□ -0.53
LIMS1-207ENST00000422797 FEM1BQ9UK73 627 aa11.72□□□□□ -0.53
LIMS1-207ENST00000422797 PCDHB2Q9Y5E7 798 aa11.72□□□□□ -0.53
LIMS1-207ENST00000422797 NFASCO94856 1347 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 A0A1W2PRG0 241 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 TCRBV7S2A1N4TA0A589 114 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 ATP2A1O14983 1001 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 TP73O15350 636 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 DKC1O60832 514 aaKnown RBP eCLIP11.71□□□□□ -0.53
LIMS1-207ENST00000422797 GH2P01242 217 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 TAC1P20366 129 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 KCNJ1P48048 391 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 PSEN1P49768 467 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 RARRES1P49788 294 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 HSD17B4P51659 736 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 JAK3P52333 1124 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 SH3BP5LQ7L8J4 393 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 SLC47A2Q86VL8 602 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 MCF2L2Q86YR7 1114 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 ZFPM1Q8IX07 1006 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 C4orf19Q8IY42 314 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 MCOLN2Q8IZK6 566 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 FITM2Q8N6M3 262 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 BANK1Q8NDB2 785 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 PARD3BQ8TEW8 1205 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 C1orf54Q8WWF1 131 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 SPIRE2Q8WWL2 714 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 DDX1Q92499 740 aaKnown RBP11.71□□□□□ -0.53
LIMS1-207ENST00000422797 RBM41Q96IZ5 413 aaKnown RBP11.71□□□□□ -0.53
LIMS1-207ENST00000422797 MFSD14AQ96MC6 490 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 FBXL18Q96ME1 805 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 MTFR1LQ9H019 292 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 PCIF1Q9H4Z3 704 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 BCAS3Q9H6U6 928 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 C1orf112Q9NSG2 853 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 LRRC4BQ9NT99 713 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 RAB20Q9NX57 234 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 CORO1CQ9ULV4 474 aaPredicted RBP11.71□□□□□ -0.53
LIMS1-207ENST00000422797 NAALADL1Q9UQQ1 740 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 NEU2Q9Y3R4 380 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 ZHX2Q9Y6X8 837 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 RGPD3A6NKT7 1758 aaPredicted RBP11.71□□□□□ -0.53
LIMS1-207ENST00000422797 RGPD4Q7Z3J3 1758 aa11.71□□□□□ -0.53
LIMS1-207ENST00000422797 GSTTP1A0A1W2PQM5 241 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 RASA4BC9J798 803 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 SMAPO00193 183 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 TRAFD1O14545 582 aaPredicted RBP11.7□□□□□ -0.54
LIMS1-207ENST00000422797 RASA4O43374 803 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 KRT16P08779 473 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 UNGP13051 313 aaPredicted RBP11.7□□□□□ -0.54
LIMS1-207ENST00000422797 GARTP22102 1010 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 SFNP31947 248 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 CHKAP35790 457 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 NSFP46459 744 aaKnown RBP11.7□□□□□ -0.54
LIMS1-207ENST00000422797 SNAP25P60880 206 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 MCL1Q07820 350 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 KLF1Q13351 362 aaPredicted RBP11.7□□□□□ -0.54
LIMS1-207ENST00000422797 LRRC14Q15048 493 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 KYNUQ16719 465 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 ACCSLQ4AC99 568 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 ZC3H12AQ5D1E8 599 aaKnown RBP11.7□□□□□ -0.54
LIMS1-207ENST00000422797 FYB2Q5VWT5 728 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 IZUMO3Q5VZ72 239 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 CC2D2BQ6DHV5 1058 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 BZW1Q7L1Q6 419 aaKnown RBP11.7□□□□□ -0.54
LIMS1-207ENST00000422797 OTUD6AQ7L8S5 288 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 PTF1AQ7RTS3 328 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 ANKS1BQ7Z6G8 1248 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 DDX27Q96GQ7 796 aaKnown RBP11.7□□□□□ -0.54
LIMS1-207ENST00000422797 FRMD8P1Q9BZ68 369 aaPredicted RBP11.7□□□□□ -0.54
LIMS1-207ENST00000422797 IKZF4Q9H2S9 585 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 SAR1AQ9NR31 198 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 SLC5A4Q9NY91 659 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 TMOD2Q9NZR1 351 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 WRAP73Q9P2S5 460 aaPredicted RBP11.7□□□□□ -0.54
LIMS1-207ENST00000422797 ADAMTSL1Q8N6G6 1762 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 EXOC1LA0A1B0GW35 172 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 ATMINO43313 823 aaPredicted RBP11.7□□□□□ -0.54
LIMS1-207ENST00000422797 ZBED4O75132 1171 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 GDF11O95390 407 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 ASMTLO95671 621 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 ARP10275 920 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 TSHRP16473 764 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 PTPN7P35236 360 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 MAGEA4P43358 317 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 RBM5P52756 815 aaKnown RBP eCLIP11.7□□□□□ -0.54
LIMS1-207ENST00000422797 RTP1P59025 263 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 TCP10Q12799 353 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 MORF4L2Q15014 288 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 ZRSR2Q15696 482 aaKnown RBP11.7□□□□□ -0.54
LIMS1-207ENST00000422797 PDK4Q16654 411 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 DOK7Q18PE1 504 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 GRIPAP1Q4V328 841 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 LRRC38Q5VT99 294 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 PAXIP1Q6ZW49 1069 aaPredicted RBP11.7□□□□□ -0.54
LIMS1-207ENST00000422797 TRABD2AQ86V40 505 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 VSIG1Q86XK7 387 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 SRRM1Q8IYB3 904 aaKnown RBP11.7□□□□□ -0.54
LIMS1-207ENST00000422797 MAML1Q92585 1016 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms