RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 STX18Q9P2W9 335 aaKnown RBP11.37□□□□□ -0.59
USP54-204ENST00000422491 RABGAP1Q9Y3P9 1069 aa11.37□□□□□ -0.59
USP54-204ENST00000422491 TBX3O15119 743 aa11.37□□□□□ -0.59
USP54-204ENST00000422491 TYROBPO43914 113 aa11.37□□□□□ -0.59
USP54-204ENST00000422491 EXOC3O60645 756 aa11.37□□□□□ -0.59
USP54-204ENST00000422491 SGPL1O95470 568 aa11.37□□□□□ -0.59
USP54-204ENST00000422491 GSTT1P30711 240 aa11.37□□□□□ -0.59
USP54-204ENST00000422491 PKN2Q16513 984 aaKnown RBP11.37□□□□□ -0.59
USP54-204ENST00000422491 GSTA3Q16772 222 aa11.37□□□□□ -0.59
USP54-204ENST00000422491 NCSTNQ92542 709 aa11.37□□□□□ -0.59
USP54-204ENST00000422491 DTNBP1Q96EV8 351 aa11.37□□□□□ -0.59
USP54-204ENST00000422491 P2RX7Q99572 595 aaKnown RBP11.37□□□□□ -0.59
USP54-204ENST00000422491 PLVAPQ9BX97 442 aa11.37□□□□□ -0.59
USP54-204ENST00000422491 NPHS2Q9NP85 383 aa11.37□□□□□ -0.59
USP54-204ENST00000422491 GTF3C4Q9UKN8 822 aa11.37□□□□□ -0.59
USP54-204ENST00000422491 R3HDM2Q9Y2K5 976 aaKnown RBP11.37□□□□□ -0.59
USP54-204ENST00000422491 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.37□□□□□ -0.59
USP54-204ENST00000422491 LOC102724428A0A0B4J2F2 783 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 EXOC1LA0A1B0GW35 172 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 ZWINTO95229 277 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 MAGEA4P43358 317 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 SIK1P57059 783 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 CERKLQ49MI3 558 aaPredicted RBP11.36□□□□□ -0.59
USP54-204ENST00000422491 CYP4F22Q6NT55 531 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 C4orf33Q8N1A6 199 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 MYCT1Q8N699 235 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 WDR60Q8WVS4 1066 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 ZNF75CPQ92670 426 aaPredicted RBP11.36□□□□□ -0.59
USP54-204ENST00000422491 ZNF184Q99676 751 aaPredicted RBP11.36□□□□□ -0.59
USP54-204ENST00000422491 SYNCQ9H7C4 482 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 ARL8BQ9NVJ2 186 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 DDX43Q9NXZ2 648 aaKnown RBP11.36□□□□□ -0.59
USP54-204ENST00000422491 LMCD1Q9NZU5 365 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 UVRAGQ9P2Y5 699 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 BCS1LQ9Y276 419 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 FAM13AO94988 1023 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 AKR1B1P15121 316 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 RHBDL3P58872 404 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 DLG4P78352 724 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 ARHGAP4P98171 946 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 WDR72Q3MJ13 1102 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 Q4G0T1 1027 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 IZUMO3Q5VZ72 239 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 NSMFQ6X4W1 530 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 HS2ST1Q7LGA3 356 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 VTI1AQ96AJ9 217 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 ZNF653Q96CK0 615 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 GBP5Q96PP8 586 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 SMC6Q96SB8 1091 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 SENP1Q9P0U3 644 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 ZNF212Q9UDV6 495 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 VAV3Q9UKW4 847 aa11.36□□□□□ -0.59
USP54-204ENST00000422491 UBE4BO95155 1302 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 CYP1A1P04798 512 aaPredicted RBP11.35□□□□□ -0.59
USP54-204ENST00000422491 CA4P22748 312 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 FMO1Q01740 532 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 LRRC23Q53EV4 343 aaPredicted RBP11.35□□□□□ -0.59
USP54-204ENST00000422491 C1orf186Q6ZWK4 172 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 ZNF720Q7Z2F6 126 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 SDCCAG8Q86SQ7 713 aaPredicted RBP11.35□□□□□ -0.59
USP54-204ENST00000422491 ZCCHC9Q8N567 271 aaKnown RBP11.35□□□□□ -0.59
USP54-204ENST00000422491 BBOF1Q8ND07 529 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 DTX3LQ8TDB6 740 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 SLC5A5Q92911 643 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 KAT5Q92993 513 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 CFAP57Q96MR6 1250 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 NR1H4Q96RI1 486 aaPredicted RBP11.35□□□□□ -0.59
USP54-204ENST00000422491 RBM15Q96T37 977 aaKnown RBP eCLIP11.35□□□□□ -0.59
USP54-204ENST00000422491 LBHD1Q9BQE6 289 aaPredicted RBP11.35□□□□□ -0.59
USP54-204ENST00000422491 POLR3CQ9BUI4 534 aaPredicted RBP11.35□□□□□ -0.59
USP54-204ENST00000422491 GLT8D2Q9H1C3 349 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 OCEL1Q9H607 264 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 ACP6Q9NPH0 428 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 STK24Q9Y6E0 443 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 ATRNL1Q5VV63 1379 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 GSTTP1A0A1W2PQM5 241 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 FAM86B1E9PN63 330 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 MEIS2O14770 477 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 LYNP07948 512 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 FAM86B2P0C5J1 330 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 ADSSP30520 456 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 RANBP1P43487 201 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 ZRSR2Q15696 482 aaKnown RBP11.35□□□□□ -0.59
USP54-204ENST00000422491 MAPK6Q16659 721 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 CNPY1Q3B7I2 92 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 PABPC1LQ4VXU2 614 aaKnown RBP11.35□□□□□ -0.59
USP54-204ENST00000422491 EPC2Q52LR7 807 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 NBPF5PQ86XG9 351 aaPredicted RBP11.35□□□□□ -0.59
USP54-204ENST00000422491 FAM71AQ8IYT1 594 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 PPFIBP2Q8ND30 876 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 RFWD2Q8NHY2 731 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 EIF2AK1Q9BQI3 630 aaKnown RBP11.35□□□□□ -0.59
USP54-204ENST00000422491 MMADHCQ9H3L0 296 aaPredicted RBP11.35□□□□□ -0.59
USP54-204ENST00000422491 PARVGQ9HBI0 331 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 SH3BP1Q9Y3L3 701 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 COL24A1Q17RW2 1714 aa11.35□□□□□ -0.59
USP54-204ENST00000422491 EMSYQ7Z589 1322 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 EML1O00423 815 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 GYG2O15488 501 aa11.34□□□□□ -0.59
USP54-204ENST00000422491 MAP3K7O43318 606 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms