RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 EXOC6Q8TAG9 804 aa4.74□□□□□ -1.65
HMGB3P20-201ENST00000417997 GAB3Q8WWW8 586 aa4.74□□□□□ -1.65
HMGB3P20-201ENST00000417997 RAPGEF4Q8WZA2 1011 aa4.74□□□□□ -1.65
HMGB3P20-201ENST00000417997 CLIP3Q96DZ5 547 aa4.74□□□□□ -1.65
HMGB3P20-201ENST00000417997 SOX7Q9BT81 388 aa4.74□□□□□ -1.65
HMGB3P20-201ENST00000417997 ANO3Q9BYT9 981 aa4.74□□□□□ -1.65
HMGB3P20-201ENST00000417997 TRIM8Q9BZR9 551 aa4.74□□□□□ -1.65
HMGB3P20-201ENST00000417997 SLC2A4RGQ9NR83 387 aa4.74□□□□□ -1.65
HMGB3P20-201ENST00000417997 CEP72Q9P209 647 aa4.74□□□□□ -1.65
HMGB3P20-201ENST00000417997 USP36Q9P275 1121 aaKnown RBP4.74□□□□□ -1.65
HMGB3P20-201ENST00000417997 USP35Q9P2H5 1018 aa4.74□□□□□ -1.65
HMGB3P20-201ENST00000417997 TSPYL4Q9UJ04 414 aa4.74□□□□□ -1.65
HMGB3P20-201ENST00000417997 C5P01031 1676 aa4.73□□□□□ -1.65
HMGB3P20-201ENST00000417997 CRB1P82279 1406 aa4.73□□□□□ -1.65
HMGB3P20-201ENST00000417997 NRP1O14786 923 aa4.73□□□□□ -1.65
HMGB3P20-201ENST00000417997 HTATSF1O43719 755 aaKnown RBP4.73□□□□□ -1.65
HMGB3P20-201ENST00000417997 KDM1AO60341 852 aa4.73□□□□□ -1.65
HMGB3P20-201ENST00000417997 TOM1O60784 492 aa4.73□□□□□ -1.65
HMGB3P20-201ENST00000417997 BCAR3O75815 825 aa4.73□□□□□ -1.65
HMGB3P20-201ENST00000417997 CLEC2LP0C7M8 214 aa4.73□□□□□ -1.65
HMGB3P20-201ENST00000417997 MAKP20794 623 aa4.73□□□□□ -1.65
HMGB3P20-201ENST00000417997 LSSP48449 732 aa4.73□□□□□ -1.65
HMGB3P20-201ENST00000417997 RARSP54136 660 aaKnown RBP4.73□□□□□ -1.65
HMGB3P20-201ENST00000417997 CD69Q07108 199 aa4.73□□□□□ -1.65
HMGB3P20-201ENST00000417997 MGAT5Q09328 741 aa4.73□□□□□ -1.65
HMGB3P20-201ENST00000417997 SPIDRQ14159 915 aa4.73□□□□□ -1.65
HMGB3P20-201ENST00000417997 DDB1Q16531 1140 aa4.73□□□□□ -1.65
HMGB3P20-201ENST00000417997 TWISTNBQ3B726 338 aaPredicted RBP4.73□□□□□ -1.65
HMGB3P20-201ENST00000417997 ZKSCAN2Q63HK3 967 aa4.73□□□□□ -1.65
HMGB3P20-201ENST00000417997 CCDC62Q6P9F0 684 aa4.73□□□□□ -1.65
HMGB3P20-201ENST00000417997 ZNF610Q8N9Z0 462 aa4.73□□□□□ -1.65
HMGB3P20-201ENST00000417997 ZNF703Q9H7S9 590 aaPredicted RBP4.73□□□□□ -1.65
HMGB3P20-201ENST00000417997 KCNG1Q9UIX4 513 aa4.73□□□□□ -1.65
HMGB3P20-201ENST00000417997 PLEKHG2Q9H7P9 1386 aa4.73□□□□□ -1.65
HMGB3P20-201ENST00000417997 WDR17Q8IZU2 1322 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 PAPPAQ13219 1627 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 DOT1LQ8TEK3 1739 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 TOGARAM1Q9Y4F4 1720 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 PRSS38A1L453 326 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 GOLGA6L6A8MZA4 724 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 IPO8O15397 1037 aaKnown RBP4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 MTSS1O43312 755 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 NRP2O60462 931 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 PDE8AO60658 829 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 PFKMP08237 780 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 HK1P19367 917 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 CASRP41180 1078 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 NRG3P56975 720 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 EVA1CP58658 441 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 TEFQ10587 303 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 TERF2Q15554 542 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 ALDH1L2Q3SY69 923 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 ATP13A4Q4VNC1 1196 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 TAF7LQ5H9L4 462 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 FNDC7Q5VTL7 733 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 BROXQ5VW32 411 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 FRMD7Q6ZUT3 714 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 TOM1L2Q6ZVM7 507 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 CXorf67Q86X51 503 aaPredicted RBP4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 UNC5BQ8IZJ1 945 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 PIK3C3Q8NEB9 887 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 ST8SIA2Q92186 375 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 USP7Q93009 1102 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 MNTQ99583 582 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 NRDE2Q9H7Z3 1164 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 HDAC5Q9UQL6 1122 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 NOC2LQ9Y3T9 749 aaKnown RBP4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 MRC1P22897 1456 aa4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.72□□□□□ -1.65
HMGB3P20-201ENST00000417997 UBR2Q8IWV8 1755 aa4.71□□□□□ -1.66
HMGB3P20-201ENST00000417997 GSG1L2A8MUP6 293 aa4.71□□□□□ -1.66
HMGB3P20-201ENST00000417997 PRAMEF4O60810 478 aa4.71□□□□□ -1.66
HMGB3P20-201ENST00000417997 LY86O95711 162 aa4.71□□□□□ -1.66
HMGB3P20-201ENST00000417997 ZNF853P0CG23 659 aa4.71□□□□□ -1.66
HMGB3P20-201ENST00000417997 RABGGTBP53611 331 aa4.71□□□□□ -1.66
HMGB3P20-201ENST00000417997 PHC1P78364 1004 aa4.71□□□□□ -1.66
HMGB3P20-201ENST00000417997 GPR158Q5T848 1215 aa4.71□□□□□ -1.66
HMGB3P20-201ENST00000417997 C20orf194Q5TEA3 1177 aa4.71□□□□□ -1.66
HMGB3P20-201ENST00000417997 KIAA0907Q7Z7F0 614 aaPredicted RBP4.71□□□□□ -1.66
HMGB3P20-201ENST00000417997 SLC5A5Q92911 643 aa4.71□□□□□ -1.66
HMGB3P20-201ENST00000417997 FAM193BQ96PV7 902 aaPredicted RBP4.71□□□□□ -1.66
HMGB3P20-201ENST00000417997 CPPED1Q9BRF8 314 aaPredicted RBP4.71□□□□□ -1.66
HMGB3P20-201ENST00000417997 STK31Q9BXU1 1019 aa4.71□□□□□ -1.66
HMGB3P20-201ENST00000417997 SLITRK6Q9H5Y7 841 aa4.71□□□□□ -1.66
HMGB3P20-201ENST00000417997 EMC7Q9NPA0 242 aa4.71□□□□□ -1.66
HMGB3P20-201ENST00000417997 PPP2R3BQ9Y5P8 575 aa4.71□□□□□ -1.66
HMGB3P20-201ENST00000417997 ITGB4P16144 1822 aa4.71□□□□□ -1.66
HMGB3P20-201ENST00000417997 AFDNP55196 1824 aaKnown RBP4.71□□□□□ -1.66
HMGB3P20-201ENST00000417997 XDHP47989 1333 aa4.71□□□□□ -1.66
HMGB3P20-201ENST00000417997 PCDH11XQ9BZA7 1347 aa4.71□□□□□ -1.66
HMGB3P20-201ENST00000417997 PCDH11YQ9BZA8 1340 aa4.71□□□□□ -1.66
HMGB3P20-201ENST00000417997 CEMIPQ8WUJ3 1361 aa4.7□□□□□ -1.66
HMGB3P20-201ENST00000417997 KLRG2A4D1S0 409 aaPredicted RBP4.7□□□□□ -1.66
HMGB3P20-201ENST00000417997 CHL1O00533 1208 aa4.7□□□□□ -1.66
HMGB3P20-201ENST00000417997 TCERG1O14776 1098 aaKnown RBP4.7□□□□□ -1.66
HMGB3P20-201ENST00000417997 HOXA3O43365 443 aaPredicted RBP4.7□□□□□ -1.66
HMGB3P20-201ENST00000417997 HSP90AB1P08238 724 aaKnown RBP4.7□□□□□ -1.66
HMGB3P20-201ENST00000417997 SLC25A3Q00325 362 aa4.7□□□□□ -1.66
HMGB3P20-201ENST00000417997 DUSP2Q05923 314 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms