RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 DDX10Q13206 875 aaKnown RBP2.96□□□□□ -1.94
MCF2-204ENST00000414978 ADAM9Q13443 819 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 SNX17Q15036 470 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 PDCD2Q16342 344 aaPredicted RBP2.96□□□□□ -1.94
MCF2-204ENST00000414978 FSCN1Q16658 493 aaKnown RBP2.96□□□□□ -1.94
MCF2-204ENST00000414978 ANO6Q4KMQ2 910 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 SLC45A4Q5BKX6 768 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 SCARA3Q6AZY7 606 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 CXorf67Q86X51 503 aaPredicted RBP2.96□□□□□ -1.94
MCF2-204ENST00000414978 ESX1Q8N693 406 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 ZNF610Q8N9Z0 462 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 DEPTORQ8TB45 409 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 HEXIM2Q96MH2 286 aaKnown RBP2.96□□□□□ -1.94
MCF2-204ENST00000414978 ASPNQ9BXN1 380 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 MTG2Q9H4K7 406 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 PRDM13Q9H4Q3 707 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 TRMT1Q9NXH9 659 aaKnown RBP2.96□□□□□ -1.94
MCF2-204ENST00000414978 ZNF609O15014 1411 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 SLX4Q8IY92 1834 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 SYNDIG1LA6NDD5 238 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 ELL2O00472 640 aaPredicted RBP2.95□□□□□ -1.94
MCF2-204ENST00000414978 WNT9AO14904 365 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 IL11P20809 199 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 MAP4P27816 1152 aaKnown RBP2.95□□□□□ -1.94
MCF2-204ENST00000414978 ADMP35318 185 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 ADCY8P40145 1251 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 MAP2K6P52564 334 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 RAB1AP62820 205 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 SLC6A3Q01959 620 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 HAUS3Q68CZ6 603 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 IQCEQ6IPM2 695 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 CEP128Q6ZU80 1094 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 C16orf59Q7L2K0 433 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 OTOP1Q7RTM1 612 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 NRSN1Q8IZ57 195 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 CACNA2D3Q8IZS8 1091 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 SVOPQ8N4V2 548 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 SLC30A5Q8TAD4 765 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 KLHDC4Q8TBB5 520 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 IPO4Q8TEX9 1081 aaKnown RBP2.95□□□□□ -1.94
MCF2-204ENST00000414978 WHAMMQ8TF30 809 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 WNT8BQ93098 351 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 LTV1Q96GA3 475 aaPredicted RBP2.95□□□□□ -1.94
MCF2-204ENST00000414978 HSPA12BQ96MM6 686 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 PTCHD1Q96NR3 888 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 BRIP1Q9BX63 1249 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 TMEM120AQ9BXJ8 343 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 TMEM60Q9H2L4 133 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 ELAC1Q9H777 363 aaKnown RBP2.95□□□□□ -1.94
MCF2-204ENST00000414978 ZNF287Q9HBT7 754 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 SLC39A2Q9NP94 309 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 PRDM7Q9NQW5 492 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 IRAK4Q9NWZ3 460 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 COA3Q9Y2R0 106 aaPredicted RBP2.95□□□□□ -1.94
MCF2-204ENST00000414978 AFG3L2Q9Y4W6 797 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 HCFC2Q9Y5Z7 792 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 ATP23Q9Y6H3 246 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 A0A1W2PPL8 197 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 ZNF561-AS1K7EIQ3 104 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 K7ENM7 598 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 PRAMEF4O60810 478 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 DTNBO60941 627 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 PRPF6O94906 941 aaKnown RBP2.95□□□□□ -1.94
MCF2-204ENST00000414978 AHSGP02765 367 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 MAPK4P31152 587 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 MAP2K3P46734 347 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 MMP14P50281 582 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 TRIM28Q13263 835 aaKnown RBP2.95□□□□□ -1.94
MCF2-204ENST00000414978 CATSPEREQ5SY80 951 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 BTBD8Q5XKL5 378 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 RETSATQ6NUM9 610 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 RPUSD3Q6P087 351 aaKnown RBP2.95□□□□□ -1.94
MCF2-204ENST00000414978 LILRB1Q8NHL6 650 aaPredicted RBP2.95□□□□□ -1.94
MCF2-204ENST00000414978 PUM2Q8TB72 1066 aaKnown RBP eCLIP2.95□□□□□ -1.94
MCF2-204ENST00000414978 ACSS3Q9H6R3 686 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 BRD9Q9H8M2 597 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 TELO2Q9Y4R8 837 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 A0A087WV62 115 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 PPP1R11O60927 126 aaPredicted RBP2.95□□□□□ -1.94
MCF2-204ENST00000414978 KRT38O76015 456 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 DDX58O95786 925 aaKnown RBP2.95□□□□□ -1.94
MCF2-204ENST00000414978 CELA3BP08861 270 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 CAPN2P17655 700 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 DDIT3P35638 169 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 MTNR1BP49286 362 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 PNLIPRP1P54315 467 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 TNFAIP2Q03169 654 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 PRKG1Q13976 671 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 NOLC1Q14978 699 aaKnown RBP eCLIP2.95□□□□□ -1.94
MCF2-204ENST00000414978 POSTNQ15063 836 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 STEAP3Q658P3 488 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 SYNE3Q6ZMZ3 975 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 BEND4Q6ZU67 534 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 FRMD7Q6ZUT3 714 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 ZSCAN30Q86W11 494 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 NOSTRINQ8IVI9 506 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 SYTL1Q8IYJ3 562 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 GLB1L3Q8NCI6 653 aaPredicted RBP2.95□□□□□ -1.94
MCF2-204ENST00000414978 OR2I1PQ8NGU4 316 aa2.95□□□□□ -1.94
MCF2-204ENST00000414978 CSGALNACT1Q8TDX6 532 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms