RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 ABCB1P08183 1280 aaPredicted RBP13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 NFICP08651 508 aa13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 CHRNA2Q15822 529 aa13.97□□□□□ -0.17
CCDC88A-204ENST00000413716 FAM135BQ49AJ0 1406 aa13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 MED26O95402 600 aa13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 ZNF667Q5HYK9 610 aa13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 PPIP5K2O43314 1243 aa13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 NDUFB5O43674 189 aa13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 TAF5LO75529 589 aa13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 TNFAIP2Q03169 654 aa13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 LRRC24Q50LG9 513 aa13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 FBXW10Q5XX13 1052 aa13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 C8orf37Q96NL8 207 aa13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 ADI1Q9BV57 179 aa13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 POLR1BQ9H9Y6 1135 aa13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 PPCSQ9HAB8 311 aa13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 MAN1B1Q9UKM7 699 aa13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 SERPINB8P50452 374 aa13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 CRYMQ14894 314 aa13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 UGP2Q16851 508 aa13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 ALKBH5Q6P6C2 394 aaKnown RBP13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 CABLES1Q8TDN4 633 aa13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 ZNF624Q9P2J8 865 aaPredicted RBP13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 DAPK2Q9UIK4 370 aa13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 FLT4P35916 1363 aa13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 CNOT3O75175 753 aaKnown RBP13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 H2AFYO75367 372 aaKnown RBP13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 LDHAP00338 332 aaKnown RBP13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 PGK2P07205 417 aa13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 AKT1P31749 480 aa13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 CCDC137Q6PK04 289 aaKnown RBP13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 KCTD17Q8N5Z5 321 aa13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 A8MXQ7 604 aa13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 STARP49675 285 aa13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 GPATCH4Q5T3I0 446 aaKnown RBP13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 HEMGNQ9BXL5 484 aa13.96□□□□□ -0.17
CCDC88A-204ENST00000413716 S100GP29377 79 aa13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 EPS8Q12929 822 aa13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 IDI1Q13907 227 aa13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 STAT4Q14765 748 aa13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 DPCR1Q3MIW9 517 aa13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 SYDE1Q6ZW31 735 aaPredicted RBP13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 RIC8BQ9NVN3 520 aa13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 COMMD9Q9P000 198 aa13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 CEP72Q9P209 647 aa13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 TMCC3Q9ULS5 477 aa13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 STAT5AP42229 794 aa13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 SARSP49591 514 aaKnown RBP13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 ERFP50548 548 aa13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 STAT5BP51692 787 aa13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 NME3Q13232 169 aa13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 NCAPHQ15003 741 aa13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 DDR2Q16832 855 aa13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 CYP51A1Q16850 503 aa13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 IFNEQ86WN2 208 aa13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 RPS6KB2Q9UBS0 482 aa13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 SLC25A13Q9UJS0 675 aa13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 PCDHGA3Q9Y5H0 932 aa13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 SEC24BO95487 1268 aa13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 SDC4P31431 198 aa13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 ATP1A4Q13733 1029 aa13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 ABCB5Q2M3G0 1257 aa13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 JADE3Q92613 823 aa13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 PCDHGA4Q9Y5G9 962 aa13.96□□□□□ -0.18
CCDC88A-204ENST00000413716 EXTL3O43909 919 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 MACC1Q6ZN28 852 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 LATS2Q9NRM7 1088 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 MYH7P12883 1935 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 ACEP12821 1306 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 hCG_1984214I3L0E3 225 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 ATN1P54259 1190 aaPredicted RBP13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 ZNF564Q8TBZ8 553 aaPredicted RBP13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 NDST4Q9H3R1 872 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 TTLL1O95922 423 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 GSTM1P09488 218 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 ARSEP51690 589 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 EIF2S3LQ2VIR3 472 aaKnown RBP13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 P3H1Q32P28 736 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 MEI4A8MW99 385 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 LCORLQ8N3X6 602 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 PTPRN2Q92932 1015 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 SLC9A7Q96T83 725 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 FAM192AQ9GZU8 254 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 TJP2Q9UDY2 1190 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 DOLKQ9UPQ8 538 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 DCPSQ96C86 337 aaKnown RBP13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 ARHGEF38Q9NXL2 777 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 SH3BP4Q9P0V3 963 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 PSMD12O00232 456 aaPredicted RBP13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 HUS1O60921 280 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 HDAC6Q9UBN7 1215 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 COQ6Q9Y2Z9 468 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 BCL10O95999 233 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 FGFR4P22455 802 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 AKR1D1P51857 326 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 ZNF284Q2VY69 593 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 CNPY3Q9BT09 278 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 PARVAQ9NVD7 372 aa13.95□□□□□ -0.18
CCDC88A-204ENST00000413716 F8W810 466 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms