RNA–Protein interactions for RNA: ENST00000411220.1

RNU4-88P-201, Transcript of RNA, U4 small nuclear 88, pseudogene, humanhuman

BASIC

Gene RNU4-88P, Length 86 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-88P-201ENST00000411220 TEFQ10587 303 aa-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 SPIDRQ14159 915 aa-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 RFTN1Q14699 578 aaPredicted RBP-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 SHHQ15465 462 aa-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 KRTAP21-3Q3LHN1 58 aa-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 ZNF776Q68DI1 518 aaPredicted RBP-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 TMEM200BQ69YZ2 307 aa-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 ALKBH2Q6NS38 261 aa-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 SLC39A5Q6ZMH5 540 aa-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 LNX2Q8N448 690 aa-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 C8orf58Q8NAV2 365 aa-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 PPP1R14CQ8TAE6 165 aa-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 GCDHQ92947 438 aaPredicted RBP-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 PTCD3Q96EY7 689 aaKnown RBP-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 SCMH1Q96GD3 660 aa-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 C1orf159Q96HA4 380 aa-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 FAM118BQ9BPY3 351 aa-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 EBF4Q9BQW3 602 aa-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 AARSD1Q9BTE6 412 aaKnown RBP-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 RETREG1Q9H6L5 497 aa-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 RETNQ9HD89 108 aa-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 ACSS2Q9NR19 701 aa-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 THSD1Q9NS62 852 aa-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 TMEM248Q9NWD8 314 aa-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 PCDHA7Q9UN72 937 aa-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 ST3GAL5Q9UNP4 418 aa-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 COA3Q9Y2R0 106 aaPredicted RBP-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 NOX1Q9Y5S8 564 aa-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 NIPBLQ6KC79 2804 aaeCLIP-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 NAV3Q8IVL0 2385 aa-0.92□□□□□ -2.56
RNU4-88P-201ENST00000411220 RIF1Q5UIP0 2472 aaKnown RBP-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 A0A0G2JLM5 398 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 A0A0J9YXV3 536 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 SHISA7A6NL88 538 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 LINC00473A8K010 186 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 SMIM22K7EJ46 135 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 MAFKO60675 156 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 CPNE3O75131 537 aaKnown RBP-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 WISP3O95389 354 aaPredicted RBP-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 IL4RP24394 825 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 IL1R2P27930 398 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 ARRB2P32121 409 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 IL13RA1P78552 427 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 DMP1Q13316 513 aaPredicted RBP-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 SEPT6Q14141 434 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 OCLNQ16625 522 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 PAN2Q504Q3 1202 aaKnown RBP-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 KRT39Q6A163 491 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 RHBDD2Q6NTF9 364 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 THNSL2Q86YJ6 484 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 ERC1Q8IUD2 1116 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 Q8N1Y9 231 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 SLC7A14Q8TBB6 771 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 ELP5Q8TE02 316 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 ZNF689Q96CS4 500 aaPredicted RBP-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 TRMT2BQ96GJ1 504 aaKnown RBP-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 EPYCQ99645 322 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 TM6SF1Q9BZW5 370 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 SMOC1Q9H4F8 434 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 PTPRHQ9HD43 1115 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 RBM12Q9NTZ6 932 aaKnown RBP-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 ZBTB40Q9NUA8 1239 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 REV1Q9UBZ9 1251 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 NKX1-2Q9UD57 310 aaPredicted RBP-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 ZNF229Q9UJW7 825 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 ZNF223Q9UK11 482 aaPredicted RBP-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 WWC3Q9ULE0 1092 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 VWA7Q9Y334 891 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 SF3B6Q9Y3B4 125 aaKnown RBP-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 WDR87Q6ZQQ6 2873 aa-0.93□□□□□ -2.56
RNU4-88P-201ENST00000411220 FAM196BA6NMK8 535 aa-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 B9A039 149 aa-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 FCHO1O14526 889 aa-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 AURKAO14965 403 aa-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 MPPED1O15442 326 aa-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 PRMT3O60678 531 aa-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 FBXO24O75426 580 aa-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 IGKV1D-16P01601 117 aa-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 ACAA1P09110 424 aaPredicted RBP-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 CGB3P0DN86 165 aa-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 GATA1P15976 413 aaPredicted RBP-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 ABL2P42684 1182 aa-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 RPL6Q02878 288 aaKnown RBP-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 GRIK2Q13002 908 aa-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 TCIRG1Q13488 830 aa-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 ZC2HC1BQ5TFG8 222 aa-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 NAPEPLDQ6IQ20 393 aa-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 ZSCAN25Q6NSZ9 544 aa-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 MAMDC2Q7Z304 686 aaPredicted RBP-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 TMPRSS9Q7Z410 1059 aa-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 FAM83AQ86UY5 434 aa-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 SFTPA2Q8IWL1 248 aa-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 AENQ8WTP8 325 aaKnown RBP-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 PHF10Q8WUB8 498 aaKnown RBP-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 ZNRF4Q8WWF5 429 aa-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 DNAJA3Q96EY1 480 aa-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 HIC2Q96JB3 615 aa-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 FAM129BQ96TA1 746 aa-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 NABP2Q9BQ15 211 aa-0.94□□□□□ -2.56
RNU4-88P-201ENST00000411220 ABHD16BQ9H3Z7 469 aa-0.94□□□□□ -2.56
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms