RNA–Protein interactions for RNA: ENST00000397901.7

CHMP1A-201, Transcript of charged multivesicular body protein 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP1A, Length 2,483 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-201ENST00000397901 SLC9A9Q8IVB4 645 aa17.02■□□□□ 0.31
CHMP1A-201ENST00000397901 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP17.02■□□□□ 0.31
CHMP1A-201ENST00000397901 FITM2Q8N6M3 262 aa17.02■□□□□ 0.31
CHMP1A-201ENST00000397901 EPS8L1Q8TE68 723 aa17.02■□□□□ 0.31
CHMP1A-201ENST00000397901 MAIP1Q8WWC4 291 aa17.02■□□□□ 0.31
CHMP1A-201ENST00000397901 CD101Q93033 1021 aa17.02■□□□□ 0.31
CHMP1A-201ENST00000397901 FGD4Q96M96 766 aa17.02■□□□□ 0.31
CHMP1A-201ENST00000397901 TMEM109Q9BVC6 243 aa17.02■□□□□ 0.31
CHMP1A-201ENST00000397901 CDC42EP4Q9H3Q1 356 aaKnown RBP17.02■□□□□ 0.31
CHMP1A-201ENST00000397901 ATRNL1Q5VV63 1379 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 CLDN3O15551 220 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 PEX11AO75192 247 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 ECEL1O95672 775 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 RFC5P40937 340 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 CALCOCO2Q13137 446 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 RRP1BQ14684 758 aaKnown RBP17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 EPC2Q52LR7 807 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 RNF220Q5VTB9 566 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 OR52E8Q6IFG1 317 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 INTS8Q75QN2 995 aaKnown RBP17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 PPM1KQ8N3J5 372 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 ANKRD42Q8N9B4 389 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 PLEKHO2Q8TD55 490 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 DNAJC9Q8WXX5 260 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 ZNF653Q96CK0 615 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 IFT43Q96FT9 208 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 FGFR1OP2Q9NVK5 253 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 MYH11P35749 1972 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 YDJCA8MPS7 323 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 TCP11X1B4DZS4 312 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 CREB3O43889 395 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 CYP1B1Q16678 543 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 CEP55Q53EZ4 464 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 TNFAIP8L3Q5GJ75 292 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 C1orf220Q5T0J3 134 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 ENDOVQ8N8Q3 282 aaKnown RBP17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 ASAP3Q8TDY4 903 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 ELMO3Q96BJ8 720 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 SH2D3AQ9BRG2 576 aa17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 NOCTQ9UK39 431 aaKnown RBP17.01■□□□□ 0.31
CHMP1A-201ENST00000397901 TMEM120BA0PK00 339 aa17■□□□□ 0.31
CHMP1A-201ENST00000397901 GOLGA8IPA6NC78 632 aa17■□□□□ 0.31
CHMP1A-201ENST00000397901 GOLGA8JA6NMD2 632 aa17■□□□□ 0.31
CHMP1A-201ENST00000397901 UNC5CO95185 931 aa17■□□□□ 0.31
CHMP1A-201ENST00000397901 POLR2MP0CAP2 368 aa17■□□□□ 0.31
CHMP1A-201ENST00000397901 ECE1P42892 770 aa17■□□□□ 0.31
CHMP1A-201ENST00000397901 PADI6Q6TGC4 694 aa17■□□□□ 0.31
CHMP1A-201ENST00000397901 TRMT1LQ7Z2T5 733 aaKnown RBP17■□□□□ 0.31
CHMP1A-201ENST00000397901 ZNF513Q8N8E2 541 aaPredicted RBP17■□□□□ 0.31
CHMP1A-201ENST00000397901 ARHGEF2Q92974 986 aaKnown RBP17■□□□□ 0.31
CHMP1A-201ENST00000397901 RUNDC3BQ96NL0 473 aa17■□□□□ 0.31
CHMP1A-201ENST00000397901 STRA6Q9BX79 667 aa17■□□□□ 0.31
CHMP1A-201ENST00000397901 TDRD3Q9H7E2 651 aaKnown RBP17■□□□□ 0.31
CHMP1A-201ENST00000397901 ETNK1Q9HBU6 452 aa17■□□□□ 0.31
CHMP1A-201ENST00000397901 TXLNGQ9NUQ3 528 aa17■□□□□ 0.31
CHMP1A-201ENST00000397901 PRKAG3Q9UGI9 489 aa17■□□□□ 0.31
CHMP1A-201ENST00000397901 G3BP2Q9UN86 482 aaKnown RBP17■□□□□ 0.31
CHMP1A-201ENST00000397901 PSME4Q14997 1843 aa17■□□□□ 0.31
CHMP1A-201ENST00000397901 CHKAP35790 457 aa16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 KRT17Q04695 432 aa16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 CCDC15Q0P6D6 951 aa16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 TRIP13Q15645 432 aaPredicted RBP16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 RBM26Q5T8P6 1007 aaKnown RBP16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 MIGA2Q7L4E1 593 aa16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 CYFIP1Q7L576 1253 aa16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 SESTD1Q86VW0 696 aa16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 UTP4Q969X6 686 aaKnown RBP16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 KREMEN1Q96MU8 473 aa16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 KCNK9Q9NPC2 374 aa16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 AAASQ9NRG9 546 aa16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 ASIC3Q9UHC3 531 aa16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 SCOCQ9UIL1 159 aa16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 ENTPD3O75355 529 aa16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 MXI1P50539 228 aa16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 STAT2P52630 851 aa16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 USP4Q13107 963 aa16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 TCEAL1Q15170 157 aa16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 CC2D2BQ6DHV5 1058 aa16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 MFSD5Q6N075 450 aa16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 AGGF1Q8N302 714 aaeCLIP16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 GDAP1Q8TB36 358 aa16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 ATG4AQ8WYN0 398 aa16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 PLEKHG4BQ96PX9 1271 aa16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 TEKT3Q9BXF9 490 aa16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 TMEM117Q9H0C3 514 aa16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 HSPBP1Q9NZL4 362 aa16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 KCND2Q9NZV8 630 aa16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 COL2A1P02458 1487 aaPredicted RBP16.99■□□□□ 0.31
CHMP1A-201ENST00000397901 HGSO14964 777 aaPredicted RBP16.98■□□□□ 0.31
CHMP1A-201ENST00000397901 ZSCAN9O15535 394 aaPredicted RBP16.98■□□□□ 0.31
CHMP1A-201ENST00000397901 ATP5HO75947 161 aa16.98■□□□□ 0.31
CHMP1A-201ENST00000397901 PSMC4P43686 418 aa16.98■□□□□ 0.31
CHMP1A-201ENST00000397901 FMO1Q01740 532 aa16.98■□□□□ 0.31
CHMP1A-201ENST00000397901 RASA3Q14644 834 aa16.98■□□□□ 0.31
CHMP1A-201ENST00000397901 SGO2Q562F6 1265 aa16.98■□□□□ 0.31
CHMP1A-201ENST00000397901 SLC17A8Q8NDX2 589 aa16.98■□□□□ 0.31
CHMP1A-201ENST00000397901 FAM136AQ96C01 138 aa16.98■□□□□ 0.31
CHMP1A-201ENST00000397901 PRMT6Q96LA8 375 aaPredicted RBP16.98■□□□□ 0.31
CHMP1A-201ENST00000397901 DMAP1Q9NPF5 467 aaPredicted RBP16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms