RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.56□□□□□ -1.2
UPF2-203ENST00000397053 WDR35Q9P2L0 1181 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 ZBTB12Q9Y330 459 aaPredicted RBP7.56□□□□□ -1.2
UPF2-203ENST00000397053 EMSYQ7Z589 1322 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 RRN3P2A6NIE6 340 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 SOWAHDA6NJG2 315 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 H0Y3Z8 333 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 HOXA2O43364 376 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 SERPINI2O75830 405 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 MCAMP43121 646 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 SLC11A2P49281 568 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 EIF3EP60228 445 aaKnown RBP7.56□□□□□ -1.2
UPF2-203ENST00000397053 TDRD10Q5VZ19 366 aaKnown RBP7.56□□□□□ -1.2
UPF2-203ENST00000397053 FAM180AQ6UWF9 173 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 MMGT1Q8N4V1 131 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 RAD54LQ92698 747 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 ELMO2Q96JJ3 720 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 CIPCQ9C0C6 399 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 INTS2Q9H0H0 1204 aaKnown RBP7.56□□□□□ -1.2
UPF2-203ENST00000397053 SLC39A10Q9ULF5 831 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 COL15A1P39059 1388 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 PALMO75781 387 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 KRT14P02533 472 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 ERVK-10P10266 1014 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 SLC9A1P19634 815 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 YWHABP31946 246 aaKnown RBP7.56□□□□□ -1.2
UPF2-203ENST00000397053 ZNF211Q13398 564 aaPredicted RBP7.56□□□□□ -1.2
UPF2-203ENST00000397053 PLCL1Q15111 1095 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 TTLL9Q3SXZ7 439 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 SV2CQ496J9 727 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 SGO1Q5FBB7 561 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 ZRANB3Q5FWF4 1079 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 BRINP3Q76B58 766 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 IFNEQ86WN2 208 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 ADGRF4Q8IZF3 695 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 CEP70Q8NHQ1 597 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 CALR3Q96L12 384 aaKnown RBP7.56□□□□□ -1.2
UPF2-203ENST00000397053 EIF2AK1Q9BQI3 630 aaKnown RBP7.56□□□□□ -1.2
UPF2-203ENST00000397053 CATSPERBQ9H7T0 1116 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 AURKCQ9UQB9 309 aa7.56□□□□□ -1.2
UPF2-203ENST00000397053 A0A087WUV0 522 aaPredicted RBP7.55□□□□□ -1.2
UPF2-203ENST00000397053 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP7.55□□□□□ -1.2
UPF2-203ENST00000397053 B3GAT3O94766 335 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 TOMM70O94826 608 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 CCDC159P0C7I6 412 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 KRT20P35900 424 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 ARFIP2P53365 341 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 CSE1LP55060 971 aaKnown RBP7.55□□□□□ -1.2
UPF2-203ENST00000397053 ZNF177Q13360 481 aaPredicted RBP7.55□□□□□ -1.2
UPF2-203ENST00000397053 DDX39BQ13838 428 aaKnown RBP7.55□□□□□ -1.2
UPF2-203ENST00000397053 MAPRE1Q15691 268 aaKnown RBP7.55□□□□□ -1.2
UPF2-203ENST00000397053 PAN2Q504Q3 1202 aaKnown RBP7.55□□□□□ -1.2
UPF2-203ENST00000397053 GRAMD4Q6IC98 578 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 RPRD1BQ9NQG5 326 aaKnown RBP7.55□□□□□ -1.2
UPF2-203ENST00000397053 TMEM260Q9NX78 707 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 ERAP1Q9NZ08 941 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 DYNC1LI1Q9Y6G9 523 aaKnown RBP7.55□□□□□ -1.2
UPF2-203ENST00000397053 H0YC42 278 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 WDR47O94967 919 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 ASS1P00966 412 aaKnown RBP7.55□□□□□ -1.2
UPF2-203ENST00000397053 APRTP07741 180 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 SUPT20HL2P0C7V6 817 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 MLNP12872 115 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 AKR1B1P15121 316 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 GUCY2CP25092 1073 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 GPC1P35052 558 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 ETFBP38117 255 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 ACOT2P49753 483 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 NEK2P51955 445 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 HDLBPQ00341 1268 aaKnown RBP7.55□□□□□ -1.2
UPF2-203ENST00000397053 PWP1Q13610 501 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 P3H1Q32P28 736 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 EMBQ6PCB8 327 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 NUP93Q8N1F7 819 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 CALML6Q8TD86 181 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 CCDC3Q9BQI4 270 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 SH2D3AQ9BRG2 576 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 EXOSC4Q9NPD3 245 aaKnown RBP7.55□□□□□ -1.2
UPF2-203ENST00000397053 FBXO10Q9UK96 956 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 EVPLLA8MZ36 301 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 PER1O15534 1290 aaPredicted RBP7.55□□□□□ -1.2
UPF2-203ENST00000397053 ZW10O43264 779 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 MMEP08473 750 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 CARSP49589 748 aaKnown RBP7.55□□□□□ -1.2
UPF2-203ENST00000397053 USP11P51784 963 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 CDC16Q13042 620 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 USP10Q14694 798 aaKnown RBP7.55□□□□□ -1.2
UPF2-203ENST00000397053 AP1ARQ63HQ0 302 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 RGS9BPQ6ZS82 235 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 CAMKK1Q8N5S9 505 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 NEDD1Q8NHV4 660 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 OSGEPL1Q9H4B0 414 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 SCUBE2Q9NQ36 999 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 CHST12Q9NRB3 414 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 FAM49BQ9NUQ9 324 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 GEMIN8Q9NWZ8 242 aaKnown RBP7.55□□□□□ -1.2
UPF2-203ENST00000397053 ZFP69BQ9UJL9 534 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 APPL1Q9UKG1 709 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 PLA2G4CQ9UP65 541 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 THOC2Q8NI27 1593 aaKnown RBP7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms