RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 KIF17Q9P2E2 1029 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 SMAPO00193 183 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 RAD51CO43502 376 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 NMT1P30419 496 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 FMO5P49326 533 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 C12orf60Q5U649 245 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 SNRNP48Q6IEG0 339 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 CELF1Q92879 486 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 ARL8AQ96BM9 186 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 TRIM62Q9BVG3 475 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 OLFML3Q9NRN5 406 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 ZNF609O15014 1411 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 CCT8L1PA6NM43 557 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 H0Y626 953 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 SPAG6O75602 509 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 GYPCP04921 128 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 PYGLP06737 847 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 KCNA3P22001 575 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 TBCCQ15814 346 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 KYAT1Q16773 422 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 RFX8Q6ZV50 586 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 PID1Q7Z2X4 250 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 ERP27Q96DN0 273 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 GCNAQ96QF7 691 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 FAM217BQ9NTX9 383 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 HACD3Q9P035 362 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 TRIM10Q9UDY6 481 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 GNAT1P11488 350 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 HADHAP40939 763 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 EFNA5P52803 228 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 ALDH18A1P54886 795 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 KCNQ4P56696 695 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 ARHGEF6Q15052 776 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 LONRF1Q17RB8 773 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 P3H1Q32P28 736 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 OR6P1Q8NGX9 317 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 FAM129AQ9BZQ8 928 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 ALG13Q9NP73 1137 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 GGT7Q9UJ14 662 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 PCDHA10Q9Y5I2 948 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 GMEB1Q9Y692 573 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 PNPLA6Q8IY17 1366 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 PDS5AQ29RF7 1337 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 E5RI56 91 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 TMEM253P0C7T8 217 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 CORO7P57737 925 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 ABCE1P61221 599 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 ITGB3BPQ13352 177 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 TRIM16LQ309B1 348 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 POTEAQ6S8J7 498 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 ATG9AQ7Z3C6 839 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 CDH24Q86UP0 819 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 SYNE4Q8N205 404 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 C9orf72Q96LT7 481 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 NPHS2Q9NP85 383 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 PKD2L2Q9NZM6 624 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 TBX3O15119 743 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 VCAM1P19320 739 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 RECQLP46063 649 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 MAP3K10Q02779 954 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 STK4Q13043 487 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 USP38Q8NB14 1042 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 NOA1Q8NC60 698 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 DTX3LQ8TDB6 740 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 LZICQ8WZA0 190 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 C18orf8Q96DM3 657 aa10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 TDRD3Q9H7E2 651 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 ZMYND8Q9ULU4 1186 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 MTO1Q9Y2Z2 717 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-203ENST00000396595 GOLGA8RI6L899 631 aa10.77□□□□□ -0.68
LIMCH1-203ENST00000396595 KLHL2O95198 593 aa10.77□□□□□ -0.68
LIMCH1-203ENST00000396595 BTNL9Q6UXG8 535 aa10.77□□□□□ -0.68
LIMCH1-203ENST00000396595 SYN2Q92777 582 aaPredicted RBP10.77□□□□□ -0.68
LIMCH1-203ENST00000396595 HPS3Q969F9 1004 aa10.77□□□□□ -0.68
LIMCH1-203ENST00000396595 ERP44Q9BS26 406 aa10.77□□□□□ -0.68
LIMCH1-203ENST00000396595 L2HGDHQ9H9P8 463 aa10.77□□□□□ -0.68
LIMCH1-203ENST00000396595 NEU2Q9Y3R4 380 aa10.77□□□□□ -0.68
LIMCH1-203ENST00000396595 TRPM1Q7Z4N2 1603 aa10.77□□□□□ -0.68
LIMCH1-203ENST00000396595 ADCY10Q96PN6 1610 aa10.77□□□□□ -0.68
LIMCH1-203ENST00000396595 MAP3K4Q9Y6R4 1608 aa10.77□□□□□ -0.68
LIMCH1-203ENST00000396595 BNIP3LO60238 219 aa10.77□□□□□ -0.68
LIMCH1-203ENST00000396595 PTGISQ16647 500 aa10.77□□□□□ -0.68
LIMCH1-203ENST00000396595 SCN4BQ8IWT1 228 aa10.77□□□□□ -0.68
LIMCH1-203ENST00000396595 KLHL25Q9H0H3 589 aa10.77□□□□□ -0.68
LIMCH1-203ENST00000396595 DCDC2Q9UHG0 476 aa10.77□□□□□ -0.68
LIMCH1-203ENST00000396595 ARHGEF40Q8TER5 1519 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 LRRC7Q96NW7 1537 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 FAM205CA6NFA0 338 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 S100A5P33763 92 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 MRPS35P82673 323 aaKnown RBP10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 KCNA1Q09470 495 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 CYTH1Q15438 398 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 UGP2Q16851 508 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 DDIASQ8IXT1 998 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 DDHD1Q8NEL9 900 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 DNAJC9Q8WXX5 260 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 SENP7Q9BQF6 1050 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 HSPBP1Q9NZL4 362 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 KCND2Q9NZV8 630 aa10.77□□□□□ -0.69
LIMCH1-203ENST00000396595 DBR1Q9UK59 544 aaKnown RBP10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms