RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 NDUFAB1O14561 156 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 THP07101 528 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 PSMA4P25789 261 aaKnown RBP8.67□□□□□ -1.02
LIMS1-203ENST00000393310 SLC8A1P32418 973 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 RFC1P35251 1148 aaPredicted RBP8.67□□□□□ -1.02
LIMS1-203ENST00000393310 PIK3CAP42336 1068 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 RRP1P56182 461 aaKnown RBP8.67□□□□□ -1.02
LIMS1-203ENST00000393310 CEP78Q5JTW2 689 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 CCSAPQ6IQ19 270 aaPredicted RBP8.67□□□□□ -1.02
LIMS1-203ENST00000393310 ANKRD54Q6NXT1 300 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 SLC36A4Q6YBV0 504 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 LPCAT2Q7L5N7 544 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 BMP8AQ7Z5Y6 402 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 GATAD2AQ86YP4 633 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 LRRC45Q96CN5 670 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 SPDL1Q96EA4 605 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 FAM20AQ96MK3 541 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 PFDN4Q9NQP4 134 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 SERTAD1Q9UHV2 236 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 PADI3Q9ULW8 664 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 PCDHA2Q9Y5H9 948 aa8.67□□□□□ -1.02
LIMS1-203ENST00000393310 DEXIO95424 95 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 NFATC1O95644 943 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 SNAI1O95863 264 aaPredicted RBP8.66□□□□□ -1.02
LIMS1-203ENST00000393310 KRT13P13646 458 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 EIF4BP23588 611 aaKnown RBP8.66□□□□□ -1.02
LIMS1-203ENST00000393310 SLFN12LQ6IEE8 588 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 C4orf50Q6ZRC1 276 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 CACNA2D4Q7Z3S7 1137 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 TPH2Q8IWU9 490 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 TOP1MTQ969P6 601 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 PPP1R16BQ96T49 567 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 RIOK1Q9BRS2 568 aaKnown RBP8.66□□□□□ -1.02
LIMS1-203ENST00000393310 SYNCQ9H7C4 482 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 TBC1D17Q9HA65 648 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 ZDHHC7Q9NXF8 308 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 ZNF214Q9UL59 606 aaPredicted RBP8.66□□□□□ -1.02
LIMS1-203ENST00000393310 ASB3Q9Y575 518 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 PNMA6EA0A0J9YXQ4 647 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 H0Y858 1186 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 ATP8B1O43520 1251 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 USO1O60763 962 aaKnown RBP8.66□□□□□ -1.02
LIMS1-203ENST00000393310 AP1G2O75843 785 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 MYCLP1P12525 358 aaPredicted RBP8.66□□□□□ -1.02
LIMS1-203ENST00000393310 PDE1CQ14123 709 aaPredicted RBP8.66□□□□□ -1.02
LIMS1-203ENST00000393310 SMAD2Q15796 467 aaKnown RBP8.66□□□□□ -1.02
LIMS1-203ENST00000393310 ZC3H12AQ5D1E8 599 aaKnown RBP8.66□□□□□ -1.02
LIMS1-203ENST00000393310 ZCCHC8Q6NZY4 707 aaKnown RBP8.66□□□□□ -1.02
LIMS1-203ENST00000393310 SND1Q7KZF4 910 aaKnown RBP eCLIP8.66□□□□□ -1.02
LIMS1-203ENST00000393310 RSRC2Q7L4I2 434 aaKnown RBP8.66□□□□□ -1.02
LIMS1-203ENST00000393310 TAOK1Q7L7X3 1001 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 VN1R2Q8NFZ6 395 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 NT5C3AQ9H0P0 336 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 MMADHCQ9H3L0 296 aaPredicted RBP8.66□□□□□ -1.02
LIMS1-203ENST00000393310 RYDENQ9NUL5 291 aaKnown RBP8.66□□□□□ -1.02
LIMS1-203ENST00000393310 ZNF232Q9UNY5 417 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 ATP6V1DQ9Y5K8 247 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 CEP290O15078 2479 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 CYP2D7A0A087X1C5 515 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 K7ERI5 159 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 CHUKO15111 745 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 INPPL1O15357 1258 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 SART1O43290 800 aaKnown RBP8.66□□□□□ -1.02
LIMS1-203ENST00000393310 HUS1O60921 280 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 LUC7L3O95232 432 aaKnown RBP8.66□□□□□ -1.02
LIMS1-203ENST00000393310 MMP1P03956 469 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 APODP05090 189 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 PPP2R3AQ06190 1150 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 CTXN3Q4LDR2 81 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 ZNF569Q5MCW4 686 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 EOGTQ5NDL2 527 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 DPH6Q7L8W6 267 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 GABPB2Q8TAK5 448 aaPredicted RBP8.66□□□□□ -1.02
LIMS1-203ENST00000393310 HPS3Q969F9 1004 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 CENPTQ96BT3 561 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 ZSCAN31Q96LW9 406 aaPredicted RBP8.66□□□□□ -1.02
LIMS1-203ENST00000393310 CFAP57Q96MR6 1250 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 SLITRK1Q96PX8 696 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 NIFKQ9BYG3 293 aaKnown RBP8.66□□□□□ -1.02
LIMS1-203ENST00000393310 KIAA1468Q9P260 1216 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.66□□□□□ -1.02
LIMS1-203ENST00000393310 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.66□□□□□ -1.02
LIMS1-203ENST00000393310 KDM3AQ9Y4C1 1321 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 ZNF233A6NK53 670 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 SOX1O00570 391 aaPredicted RBP8.66□□□□□ -1.02
LIMS1-203ENST00000393310 CFHP08603 1231 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 TAL1P17542 331 aaPredicted RBP8.66□□□□□ -1.02
LIMS1-203ENST00000393310 PCSK1P29120 753 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 QARSP47897 775 aaKnown RBP8.66□□□□□ -1.02
LIMS1-203ENST00000393310 MXRA7P84157 204 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 CEBPZQ03701 1054 aaKnown RBP8.66□□□□□ -1.02
LIMS1-203ENST00000393310 PSMD5Q16401 504 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 LETM2Q2VYF4 491 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 CAPRIN2Q6IMN6 1127 aaKnown RBP8.66□□□□□ -1.02
LIMS1-203ENST00000393310 NIPA1Q7RTP0 329 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 ZBTB10Q96DT7 871 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 RIT2Q99578 217 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 RGL1Q9NZL6 768 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 FBXO4Q9UKT5 387 aa8.66□□□□□ -1.02
LIMS1-203ENST00000393310 GIT1Q9Y2X7 761 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms