RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 CALML6Q8TD86 181 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 C17orf80Q9BSJ5 609 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 MTIF3Q9H2K0 278 aaKnown RBP13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 ADCY3O60266 1144 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 RGS4P49798 205 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 RUNX1T1Q06455 604 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 CACNB2Q08289 660 aaPredicted RBP13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 SLC9A5Q14940 896 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 SPATA21Q7Z572 469 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 ANKMY2Q8IV38 441 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 PIGBQ92521 554 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 CD274Q9NZQ7 290 aa13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 XPO7Q9UIA9 1087 aaKnown RBP13.44□□□□□ -0.26
CCDC88C-204ENST00000389857 PRAMEF22A3QJZ6 481 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 SUPT3HB4E1H0 165 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 SCP2P22307 547 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 FGFR4P22455 802 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 RBP5P82980 135 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 CYTH1Q15438 398 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 CYGBQ8WWM9 190 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 USP6NLQ92738 828 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 TMA16Q96EY4 203 aaKnown RBP13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 ASCC2Q9H1I8 757 aaPredicted RBP13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 KRCC1Q9NPI7 259 aaPredicted RBP13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 ARL2BPQ9Y2Y0 163 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 RPS6KA4O75676 772 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 EYA4O95677 639 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 EIF2B5Q13144 721 aaKnown RBP13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 SDE2Q6IQ49 451 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 RFX8Q6ZV50 586 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 SYNE4Q8N205 404 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 THAP11Q96EK4 314 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 CATSPERBQ9H7T0 1116 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 MINPP1Q9UNW1 487 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 TCP11X1B4DZS4 312 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 AGTP01019 485 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 LTKP29376 864 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 SSTR3P32745 418 aaPredicted RBP13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 RAET1EQ8TD07 263 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 RNPC3Q96LT9 517 aaKnown RBP13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 RPAP3Q9H6T3 665 aaPredicted RBP13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 GID8Q9NWU2 228 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 C6orf203Q9P0P8 240 aaPredicted RBP13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 HERC5Q9UII4 1024 aaKnown RBP13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 CLASP2O75122 1294 aaKnown RBP13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 PHF2O75151 1096 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 UBE3AQ05086 875 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 EPHA7Q15375 998 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 ARMC6Q6NXE6 501 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 KDELC2Q7Z4H8 507 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 TMEM245Q9H330 911 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 SLC30A1Q9Y6M5 507 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 ADGRL3Q9HAR2 1447 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 H7C1W4 665 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 PRR29P0C7W0 189 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 GYS2P54840 703 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 TOB2Q14106 344 aaPredicted RBP13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 TRIM69Q86WT6 500 aa13.43□□□□□ -0.26
CCDC88C-204ENST00000389857 KBTBD13C9JR72 458 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 WBP4O75554 376 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 PLA2G4AP47712 749 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 DEFA1P59665 94 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 DEFA3P59666 94 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 TP53BP2Q13625 1128 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 TMEM132DQ14C87 1099 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 TERF2Q15554 542 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 EFL1Q7Z2Z2 1120 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 CCDC15Q0P6D6 951 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 COBLL1Q53SF7 1204 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 WDR48Q8TAF3 677 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 HES6Q96HZ4 224 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 CD209Q9NNX6 404 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 SCN3BQ9NY72 215 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 CPDO75976 1380 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 GOLGA8RI6L899 631 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 SASH1O94885 1247 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 KLHL2O95198 593 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 CD4P01730 458 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 SESN2P58004 480 aaPredicted RBP13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 MTFR1Q15390 333 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 HAUS6Q7Z4H7 955 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 DHX40Q8IX18 779 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 SHCBP1Q8NEM2 672 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 FAM167BQ9BTA0 163 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 PSMC3IPQ9P2W1 217 aaPredicted RBP13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 EEF2KO00418 725 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 KDSRQ06136 332 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 STX3Q13277 289 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 SMAD1Q15797 465 aaKnown RBP13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 IL31Q6EBC2 164 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 PGBD3Q8N328 593 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 KCNK16Q96T55 309 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 SLC38A7Q9NVC3 462 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 SEPT3Q9UH03 358 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 DTNAQ9Y4J8 743 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 MYO1CO00159 1063 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 PDXKO00764 312 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 CCDC142Q17RM4 750 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 OTUD5Q96G74 571 aa13.42□□□□□ -0.26
CCDC88C-204ENST00000389857 COL15A1P39059 1388 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms