RNA–Protein interactions for RNA: ENST00000378725.3

SSU72-203, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

TSL 2

Gene SSU72, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-203ENST00000378725 TADA2AO75478 443 aa20.3■□□□□ 0.84
SSU72-203ENST00000378725 AKAP3O75969 853 aa20.3■□□□□ 0.84
SSU72-203ENST00000378725 KIF4AO95239 1232 aa20.3■□□□□ 0.84
SSU72-203ENST00000378725 IGFBP6P24592 240 aaPredicted RBP20.3■□□□□ 0.84
SSU72-203ENST00000378725 NLRP12P59046 1061 aa20.3■□□□□ 0.84
SSU72-203ENST00000378725 FKBP3Q00688 224 aaKnown RBP20.3■□□□□ 0.84
SSU72-203ENST00000378725 KLHL40Q2TBA0 621 aa20.3■□□□□ 0.84
SSU72-203ENST00000378725 TTI2Q6NXR4 508 aa20.3■□□□□ 0.84
SSU72-203ENST00000378725 CACTINQ8WUQ7 758 aaKnown RBP20.3■□□□□ 0.84
SSU72-203ENST00000378725 NELFBQ8WX92 580 aa20.3■□□□□ 0.84
SSU72-203ENST00000378725 GZF1Q9H116 711 aaPredicted RBP20.3■□□□□ 0.84
SSU72-203ENST00000378725 ANO9A1A5B4 782 aa20.29■□□□□ 0.84
SSU72-203ENST00000378725 TRIM49BA6NDI0 452 aa20.29■□□□□ 0.84
SSU72-203ENST00000378725 CETN3O15182 167 aa20.29■□□□□ 0.84
SSU72-203ENST00000378725 B3GAT3O94766 335 aa20.29■□□□□ 0.84
SSU72-203ENST00000378725 PSMC2P35998 433 aaKnown RBP20.29■□□□□ 0.84
SSU72-203ENST00000378725 GUCY2FP51841 1108 aa20.29■□□□□ 0.84
SSU72-203ENST00000378725 ERVFC1P60507 584 aa20.29■□□□□ 0.84
SSU72-203ENST00000378725 CLDN10P78369 228 aa20.29■□□□□ 0.84
SSU72-203ENST00000378725 CEP135Q66GS9 1140 aa20.29■□□□□ 0.84
SSU72-203ENST00000378725 KLHL10Q6JEL2 608 aa20.29■□□□□ 0.84
SSU72-203ENST00000378725 PDE12Q6L8Q7 609 aaKnown RBP20.29■□□□□ 0.84
SSU72-203ENST00000378725 WDR49Q8IV35 697 aa20.29■□□□□ 0.84
SSU72-203ENST00000378725 TMEM130Q8N3G9 435 aa20.29■□□□□ 0.84
SSU72-203ENST00000378725 C3orf58Q8NDZ4 430 aa20.29■□□□□ 0.84
SSU72-203ENST00000378725 PLEKHO2Q8TD55 490 aa20.29■□□□□ 0.84
SSU72-203ENST00000378725 PARD3BQ8TEW8 1205 aa20.29■□□□□ 0.84
SSU72-203ENST00000378725 DUSP9Q99956 384 aaKnown RBP20.29■□□□□ 0.84
SSU72-203ENST00000378725 MKNK1Q9BUB5 465 aa20.29■□□□□ 0.84
SSU72-203ENST00000378725 GPR62Q9BZJ7 368 aa20.29■□□□□ 0.84
SSU72-203ENST00000378725 TLR9Q9NR96 1032 aa20.29■□□□□ 0.84
SSU72-203ENST00000378725 INTS13Q9NVM9 706 aa20.29■□□□□ 0.84
SSU72-203ENST00000378725 DPP3Q9NY33 737 aa20.29■□□□□ 0.84
SSU72-203ENST00000378725 CITO14578 2027 aa20.29■□□□□ 0.84
SSU72-203ENST00000378725 BICDL2A1A5D9 508 aa20.28■□□□□ 0.84
SSU72-203ENST00000378725 PIRO00625 290 aa20.28■□□□□ 0.84
SSU72-203ENST00000378725 SOD2P04179 222 aa20.28■□□□□ 0.84
SSU72-203ENST00000378725 IGFBP4P22692 258 aa20.28■□□□□ 0.84
SSU72-203ENST00000378725 TFAMQ00059 246 aaKnown RBP20.28■□□□□ 0.84
SSU72-203ENST00000378725 ENPEPQ07075 957 aa20.28■□□□□ 0.84
SSU72-203ENST00000378725 PAK1Q13153 545 aa20.28■□□□□ 0.84
SSU72-203ENST00000378725 DUOXA2Q1HG44 320 aa20.28■□□□□ 0.84
SSU72-203ENST00000378725 C9orf57Q5W0N0 161 aa20.28■□□□□ 0.84
SSU72-203ENST00000378725 FUT10Q6P4F1 479 aa20.28■□□□□ 0.84
SSU72-203ENST00000378725 TAS1R1Q7RTX1 841 aa20.28■□□□□ 0.84
SSU72-203ENST00000378725 VPS52Q8N1B4 723 aa20.28■□□□□ 0.84
SSU72-203ENST00000378725 CXorf38Q8TB03 319 aa20.28■□□□□ 0.84
SSU72-203ENST00000378725 TMC2Q8TDI7 906 aa20.28■□□□□ 0.84
SSU72-203ENST00000378725 CCDC127Q96BQ5 260 aa20.28■□□□□ 0.84
SSU72-203ENST00000378725 BORCS6Q96GS4 357 aa20.28■□□□□ 0.84
SSU72-203ENST00000378725 FNBP1Q96RU3 617 aa20.28■□□□□ 0.84
SSU72-203ENST00000378725 CGRRF1Q99675 332 aa20.28■□□□□ 0.84
SSU72-203ENST00000378725 ZBP1Q9H171 429 aa20.28■□□□□ 0.84
SSU72-203ENST00000378725 NGRNQ9NPE2 291 aaKnown RBP20.28■□□□□ 0.84
SSU72-203ENST00000378725 CHST7Q9NS84 486 aa20.28■□□□□ 0.84
SSU72-203ENST00000378725 RWDD2AQ9UIY3 292 aa20.28■□□□□ 0.84
SSU72-203ENST00000378725 CTNND2Q9UQB3 1225 aa20.28■□□□□ 0.84
SSU72-203ENST00000378725 PTPRJQ12913 1337 aa20.27■□□□□ 0.84
SSU72-203ENST00000378725 SLC34A2O95436 690 aa20.27■□□□□ 0.84
SSU72-203ENST00000378725 CTSAP10619 480 aa20.27■□□□□ 0.84
SSU72-203ENST00000378725 FOSL2P15408 326 aa20.27■□□□□ 0.84
SSU72-203ENST00000378725 IRS1P35568 1242 aa20.27■□□□□ 0.84
SSU72-203ENST00000378725 DPCR1Q3MIW9 517 aa20.27■□□□□ 0.84
SSU72-203ENST00000378725 CT47A1Q5JQC4 288 aaPredicted RBP20.27■□□□□ 0.84
SSU72-203ENST00000378725 FAM186BQ8IYM0 893 aa20.27■□□□□ 0.84
SSU72-203ENST00000378725 OR5B17Q8NGF7 314 aa20.27■□□□□ 0.84
SSU72-203ENST00000378725 HASPINQ8TF76 798 aa20.27■□□□□ 0.84
SSU72-203ENST00000378725 ZNF516Q92618 1163 aa20.27■□□□□ 0.84
SSU72-203ENST00000378725 CEP63Q96MT8 703 aa20.27■□□□□ 0.84
SSU72-203ENST00000378725 MED15Q96RN5 788 aa20.27■□□□□ 0.84
SSU72-203ENST00000378725 POP1Q99575 1024 aaKnown RBP20.27■□□□□ 0.84
SSU72-203ENST00000378725 HERC2P3Q9BVR0 1158 aa20.27■□□□□ 0.84
SSU72-203ENST00000378725 SZT2Q5T011 3432 aa20.27■□□□□ 0.84
SSU72-203ENST00000378725 SF3B1O75533 1304 aaKnown RBP eCLIP20.27■□□□□ 0.832e-6■■■■■ 141.7
SSU72-203ENST00000378725 TRIP11Q15643 1979 aa20.26■□□□□ 0.83
SSU72-203ENST00000378725 COL4A4P53420 1690 aaPredicted RBP20.26■□□□□ 0.83
SSU72-203ENST00000378725 DLATP10515 647 aaKnown RBP20.26■□□□□ 0.83
SSU72-203ENST00000378725 PAX3P23760 479 aa20.26■□□□□ 0.83
SSU72-203ENST00000378725 ELAVL2Q12926 359 aaKnown RBP20.26■□□□□ 0.83
SSU72-203ENST00000378725 CAVIN1Q6NZI2 390 aaKnown RBP20.26■□□□□ 0.83
SSU72-203ENST00000378725 INTS8Q75QN2 995 aaKnown RBP20.26■□□□□ 0.83
SSU72-203ENST00000378725 TMC7Q7Z402 723 aa20.26■□□□□ 0.83
SSU72-203ENST00000378725 FILIP1Q7Z7B0 1213 aa20.26■□□□□ 0.83
SSU72-203ENST00000378725 GPR65Q8IYL9 337 aa20.26■□□□□ 0.83
SSU72-203ENST00000378725 MRPL43Q8N983 215 aaKnown RBP20.26■□□□□ 0.83
SSU72-203ENST00000378725 C1orf127Q8N9H9 656 aa20.26■□□□□ 0.83
SSU72-203ENST00000378725 SYAP1Q96A49 352 aaPredicted RBP20.26■□□□□ 0.83
SSU72-203ENST00000378725 EEF2KMTQ96G04 330 aa20.26■□□□□ 0.83
SSU72-203ENST00000378725 ANKRD36BP1Q96IX9 119 aa20.26■□□□□ 0.83
SSU72-203ENST00000378725 TCF25Q9BQ70 676 aa20.26■□□□□ 0.83
SSU72-203ENST00000378725 ITGA11Q9UKX5 1188 aa20.26■□□□□ 0.83
SSU72-203ENST00000378725 IRAK3Q9Y616 596 aa20.26■□□□□ 0.83
SSU72-203ENST00000378725 CHD7Q9P2D1 2997 aa20.26■□□□□ 0.83
SSU72-203ENST00000378725 ANK1P16157 1881 aa20.25■□□□□ 0.83
SSU72-203ENST00000378725 PDCD11Q14690 1871 aaKnown RBP20.25■□□□□ 0.83
SSU72-203ENST00000378725 PLXNA4Q9HCM2 1894 aa20.25■□□□□ 0.83
SSU72-203ENST00000378725 TULP1O00294 542 aaPredicted RBP20.25■□□□□ 0.83
SSU72-203ENST00000378725 PPEF2O14830 753 aa20.25■□□□□ 0.83
SSU72-203ENST00000378725 IKBKBO14920 756 aa20.25■□□□□ 0.83
SSU72-203ENST00000378725 SLC16A3O15427 465 aaKnown RBP20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms