RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 SPTLC1O15269 473 aa12.42□□□□□ -0.42
PTPN1-201ENST00000371621 ZSCAN9O15535 394 aaPredicted RBP12.42□□□□□ -0.42
PTPN1-201ENST00000371621 TPST1O60507 370 aa12.42□□□□□ -0.42
PTPN1-201ENST00000371621 PCCAP05165 728 aaPredicted RBP12.42□□□□□ -0.42
PTPN1-201ENST00000371621 C21orf59P57076 290 aa12.42□□□□□ -0.42
PTPN1-201ENST00000371621 ZYXQ15942 572 aaKnown RBP12.42□□□□□ -0.42
PTPN1-201ENST00000371621 PPP1R14BQ96C90 147 aa12.42□□□□□ -0.42
PTPN1-201ENST00000371621 DCAF5Q96JK2 942 aa12.42□□□□□ -0.42
PTPN1-201ENST00000371621 ZNF333Q96JL9 665 aa12.42□□□□□ -0.42
PTPN1-201ENST00000371621 ZNF317Q96PQ6 595 aaPredicted RBP12.42□□□□□ -0.42
PTPN1-201ENST00000371621 SERPINI1Q99574 410 aa12.42□□□□□ -0.42
PTPN1-201ENST00000371621 SH3GL1Q99961 368 aa12.42□□□□□ -0.42
PTPN1-201ENST00000371621 EIF2AQ9BY44 585 aaKnown RBP12.42□□□□□ -0.42
PTPN1-201ENST00000371621 E2F8A0AVK6 867 aa12.42□□□□□ -0.42
PTPN1-201ENST00000371621 WNT7AO00755 349 aa12.42□□□□□ -0.42
PTPN1-201ENST00000371621 TTC4O95801 387 aa12.42□□□□□ -0.42
PTPN1-201ENST00000371621 ANPEPP15144 967 aa12.42□□□□□ -0.42
PTPN1-201ENST00000371621 PTENP60484 403 aa12.42□□□□□ -0.42
PTPN1-201ENST00000371621 CDK17Q00537 523 aa12.42□□□□□ -0.42
PTPN1-201ENST00000371621 ACSBG2Q5FVE4 666 aa12.42□□□□□ -0.42
PTPN1-201ENST00000371621 PERM1Q5SV97 790 aa12.42□□□□□ -0.42
PTPN1-201ENST00000371621 RHPN2Q8IUC4 686 aa12.42□□□□□ -0.42
PTPN1-201ENST00000371621 OR6Y1Q8NGX8 325 aa12.42□□□□□ -0.42
PTPN1-201ENST00000371621 PTPRN2Q92932 1015 aa12.42□□□□□ -0.42
PTPN1-201ENST00000371621 EDEM3Q9BZQ6 932 aa12.42□□□□□ -0.42
PTPN1-201ENST00000371621 AK5Q9Y6K8 562 aa12.42□□□□□ -0.42
PTPN1-201ENST00000371621 PCDH11XQ9BZA7 1347 aa12.42□□□□□ -0.42
PTPN1-201ENST00000371621 SPDYE16A6NNV3 312 aaPredicted RBP12.41□□□□□ -0.42
PTPN1-201ENST00000371621 VCAM1P19320 739 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 ADRA1DP25100 572 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 NSFP46459 744 aaKnown RBP12.41□□□□□ -0.42
PTPN1-201ENST00000371621 ARSEP51690 589 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 PKN2Q16513 984 aaKnown RBP12.41□□□□□ -0.42
PTPN1-201ENST00000371621 RIPOR1Q6ZS17 1223 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 KRT27Q7Z3Y8 459 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 ZBTB8BQ8NAP8 495 aaPredicted RBP12.41□□□□□ -0.42
PTPN1-201ENST00000371621 ZFYVE19Q96K21 471 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 TFCP2L1Q9NZI6 479 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 DIS3Q9Y2L1 958 aaKnown RBP12.41□□□□□ -0.42
PTPN1-201ENST00000371621 MTO1Q9Y2Z2 717 aaKnown RBP12.41□□□□□ -0.42
PTPN1-201ENST00000371621 RICTORQ6R327 1708 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 IQANK1A0A1B0GTG1 560 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 DDAH1O94760 285 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 CCDC159P0C7I6 412 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 HDAC4P56524 1084 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 DAB2P98082 770 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 MTA1Q13330 715 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 C2CD6Q53TS8 623 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 NCCRP1Q6ZVX7 275 aaPredicted RBP12.41□□□□□ -0.42
PTPN1-201ENST00000371621 RBM46Q8TBY0 533 aaKnown RBP12.41□□□□□ -0.42
PTPN1-201ENST00000371621 MAML3Q96JK9 1138 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 SNX25Q9H3E2 840 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 NOL6Q9H6R4 1146 aaKnown RBP12.41□□□□□ -0.42
PTPN1-201ENST00000371621 LRRC42Q9Y546 428 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 PREX1Q8TCU6 1659 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 USP17L3A6NCW0 530 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 USP17L4A6NCW7 530 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 NEMP1O14524 444 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 CD58P19256 250 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 ITIH2P19823 946 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 PSMC2P35998 433 aaKnown RBP12.41□□□□□ -0.42
PTPN1-201ENST00000371621 CDK7P50613 346 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 CEP55Q53EZ4 464 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 FIGNQ5HY92 759 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 USP17L1Q7RTZ2 530 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 ATG9AQ7Z3C6 839 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.41□□□□□ -0.42
PTPN1-201ENST00000371621 STK17AQ9UEE5 414 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 PFASO15067 1338 aa12.41□□□□□ -0.42
PTPN1-201ENST00000371621 BGNP21810 368 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 RPA3P35244 121 aaPredicted RBP12.4□□□□□ -0.42
PTPN1-201ENST00000371621 LMNB2Q03252 620 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 ITGA7Q13683 1181 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 NRF1Q16656 503 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 C3orf62Q6ZUJ4 267 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 MAPKAPK5Q8IW41 473 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 SEPT12Q8IYM1 358 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 SH3RF3Q8TEJ3 882 aaPredicted RBP12.4□□□□□ -0.42
PTPN1-201ENST00000371621 LRMDAQ9H2I8 198 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 SPC25Q9HBM1 224 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 ARL8BQ9NVJ2 186 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 TMEM260Q9NX78 707 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 DDX56Q9NY93 547 aaKnown RBP12.4□□□□□ -0.42
PTPN1-201ENST00000371621 INPP5FQ9Y2H2 1132 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 ARIH1Q9Y4X5 557 aaPredicted RBP12.4□□□□□ -0.42
PTPN1-201ENST00000371621 GSG1L2A8MUP6 293 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 DAB1O75553 588 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 KRT8P05787 483 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 RAG1P15918 1043 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 CYP11B2P19099 503 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 RPL5P46777 297 aaKnown RBP12.4□□□□□ -0.42
PTPN1-201ENST00000371621 SP4Q02446 784 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 UBE2SQ16763 222 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 GJC2Q5T442 439 aaPredicted RBP12.4□□□□□ -0.42
PTPN1-201ENST00000371621 KBTBD2Q8IY47 623 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 PAF1Q8N7H5 531 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 TMA16Q96EY4 203 aaKnown RBP12.4□□□□□ -0.42
PTPN1-201ENST00000371621 ING2Q9H160 280 aa12.4□□□□□ -0.42
PTPN1-201ENST00000371621 C12orf65Q9H3J6 166 aaKnown RBP12.4□□□□□ -0.42
PTPN1-201ENST00000371621 AIPL1Q9NZN9 384 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms