RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 CNDP1Q96KN2 507 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 NFKBIZQ9BYH8 718 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 PPP2R2CQ9Y2T4 447 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 MYO5BQ9ULV0 1848 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 CCDC151A5D8V7 595 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 KCNK3O14649 394 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 EPHB4P54760 987 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 THOC5Q13769 683 aaKnown RBP9.09□□□□□ -0.95
SYNE1-206ENST00000367253 DAB2IPQ5VWQ8 1189 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 KIRREL3Q8IZU9 778 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 USP13Q92995 863 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-206ENST00000367253 STAMBPL1Q96FJ0 436 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 WNK4Q96J92 1243 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 ZSCAN10Q96SZ4 725 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-206ENST00000367253 LLPHQ9BRT6 129 aaKnown RBP9.09□□□□□ -0.95
SYNE1-206ENST00000367253 USP26Q9BXU7 913 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 XPO4Q9C0E2 1151 aaKnown RBP9.09□□□□□ -0.95
SYNE1-206ENST00000367253 DPH5Q9H2P9 285 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 SNX6Q9UNH7 406 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 VSTM5A8MXK1 200 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 IFNB1P01574 187 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 ALDH2P05091 517 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 USP4Q13107 963 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 SGCGQ13326 291 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 FAM47AQ5JRC9 791 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 C6orf118Q5T5N4 469 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 CENPSQ8N2Z9 138 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 STAG2Q8N3U4 1231 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 KBTBD3Q8NAB2 608 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 NMD3Q96D46 503 aaKnown RBP9.09□□□□□ -0.95
SYNE1-206ENST00000367253 ZNF594Q96JF6 807 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-206ENST00000367253 DNAJC11Q9NVH1 559 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 ABI3Q9P2A4 366 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 CDC23Q9UJX2 597 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 WDR91A4D1P6 747 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 VWA3AA6NCI4 1184 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 GRSF1Q12849 480 aaKnown RBP eCLIP9.09□□□□□ -0.95
SYNE1-206ENST00000367253 MPP3Q13368 585 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 MTMR1Q13613 665 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 TBC1D1Q86TI0 1168 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-206ENST00000367253 ASZ1Q8WWH4 475 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 HDAC2Q92769 488 aaKnown RBP9.09□□□□□ -0.95
SYNE1-206ENST00000367253 GMCL1Q96IK5 515 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 SYT17Q9BSW7 474 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 INTS2Q9H0H0 1204 aaKnown RBP9.09□□□□□ -0.95
SYNE1-206ENST00000367253 UPF3AQ9H1J1 476 aaKnown RBP9.09□□□□□ -0.95
SYNE1-206ENST00000367253 EURLQ9NYK6 297 aa9.09□□□□□ -0.95
SYNE1-206ENST00000367253 CAB39Q9Y376 341 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-206ENST00000367253 GLTPD2A6NH11 291 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 HDAC4P56524 1084 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 MGAT5BQ3V5L5 792 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 BSPRYQ5W0U4 402 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 ADCK1Q86TW2 530 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 PPP1R13BQ96KQ4 1090 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 GPR20Q99678 358 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 UXTQ9UBK9 157 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-206ENST00000367253 SSH2Q76I76 1423 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 GGPS1O95749 300 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 HMGCRP04035 888 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 CKMP06732 381 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 PYGBP11216 843 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 HARS2P49590 506 aaKnown RBP9.08□□□□□ -0.96
SYNE1-206ENST00000367253 EFR3AQ14156 821 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 ZNF827Q17R98 1081 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 C15orf59Q2T9L4 293 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-206ENST00000367253 ZNF568Q3ZCX4 644 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 TRMT10CQ7L0Y3 403 aaKnown RBP9.08□□□□□ -0.96
SYNE1-206ENST00000367253 DPF2Q92785 391 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 TLE6Q9H808 572 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 ZSWIM6Q9HCJ5 1215 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 ZNF70Q9UC06 446 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-206ENST00000367253 EMSYQ7Z589 1322 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 IGSF9BQ9UPX0 1349 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 PSMD14O00487 310 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 GNB5O14775 395 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 CUTAO60888 179 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 ESRRAP11474 423 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-206ENST00000367253 GRIK1P39086 918 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 MFAP3P55082 362 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 GUCY2DQ02846 1103 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 ARID3BQ8IVW6 561 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-206ENST00000367253 IL17REQ8NFR9 667 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-206ENST00000367253 ZNF558Q96NG5 402 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 DACH2Q96NX9 599 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 CENPOQ9BU64 300 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 NLNQ9BYT8 704 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 SPEF1Q9Y4P9 236 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 CLDN3O15551 220 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 CIAO1O76071 339 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 CTSEP14091 401 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 BRAFP15056 766 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 PECAM1P16284 738 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-206ENST00000367253 NAT1P18440 290 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 UBE3CQ15386 1083 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 TMEM259Q4ZIN3 620 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 TDRD10Q5VZ19 366 aaKnown RBP9.08□□□□□ -0.96
SYNE1-206ENST00000367253 PRR23BQ6ZRT6 265 aa9.08□□□□□ -0.96
SYNE1-206ENST00000367253 TFB1MQ8WVM0 346 aaKnown RBP9.08□□□□□ -0.96
SYNE1-206ENST00000367253 HDAC11Q96DB2 347 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms