RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 RIBC1Q8N443 379 aaPredicted RBP20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 CPA5Q8WXQ8 436 aa20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 MANSC1Q9H8J5 431 aa20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 CHMP2BQ9UQN3 213 aa20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 NBPF26B4DH59 902 aa20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 M0QYV0 167 aa20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 GLI1P08151 1106 aa20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 HERVK_113P62684 666 aa20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 PTK7Q13308 1070 aa20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 FLOT2Q14254 428 aa20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 POTEAQ6S8J7 498 aa20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 GADL1Q6ZQY3 521 aa20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 SUGP1Q8IWZ8 645 aaKnown RBP20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 NBPF15Q8N660 670 aa20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 ADNPQ9H2P0 1102 aa20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 RAB6BQ9NRW1 208 aa20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 TBC1D22BQ9NU19 505 aa20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 FAM196BA6NMK8 535 aa20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 XPO1O14980 1071 aaKnown RBP20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 ARHGEF9O43307 516 aa20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 COILP38432 576 aaPredicted RBP20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 ANGPTL8Q6UXH0 198 aa20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 CMTM5Q96DZ9 223 aa20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 DHX35Q9H5Z1 703 aaKnown RBP20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 SRP68Q9UHB9 627 aaKnown RBP20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 PHTF1Q9UMS5 762 aa20.57■□□□□ 0.88
CCDC88B-202ENST00000356786 PPLO60437 1756 aa20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 DEAF1O75398 565 aaPredicted RBP20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 MAPK6Q16659 721 aa20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 KLHDC7AQ5VTJ3 777 aa20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 PRPF39Q86UA1 669 aaKnown RBP20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 APLFQ8IW19 511 aaPredicted RBP20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 REEP2Q9BRK0 252 aa20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 FSD1LQ9BXM9 530 aa20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 PMS1P54277 932 aaKnown RBP20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 NKX1-1Q15270 411 aaPredicted RBP20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 LMBRD2Q68DH5 695 aaPredicted RBP20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 ARID3BQ8IVW6 561 aaPredicted RBP20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 FAM129AQ9BZQ8 928 aa20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 PCMTD2Q9NV79 361 aa20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 DDX20Q9UHI6 824 aaKnown RBP20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 SLC12A6Q9UHW9 1150 aa20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 AKAP10O43572 662 aa20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 ATP6V1G2O95670 118 aa20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 KCNA4P22459 653 aa20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 MIGA2Q7L4E1 593 aa20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 NLRP9Q7RTR0 991 aa20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 RMDN3Q96TC7 470 aa20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 CHORDC1Q9UHD1 332 aaPredicted RBP20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 ATMINO43313 823 aaPredicted RBP20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 SERPINB2P05120 415 aa20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 FBXO25Q8TCJ0 367 aa20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 DCLRE1BQ9H816 532 aa20.56■□□□□ 0.88
CCDC88B-202ENST00000356786 GRAPQ13588 217 aa20.55■□□□□ 0.88
CCDC88B-202ENST00000356786 CYFIP1Q7L576 1253 aa20.55■□□□□ 0.88
CCDC88B-202ENST00000356786 GRAPLQ8TC17 118 aaPredicted RBP20.55■□□□□ 0.88
CCDC88B-202ENST00000356786 NPR1P16066 1061 aa20.55■□□□□ 0.88
CCDC88B-202ENST00000356786 CAVIN3Q969G5 261 aa20.55■□□□□ 0.88
CCDC88B-202ENST00000356786 HEY2Q9UBP5 337 aa20.55■□□□□ 0.88
CCDC88B-202ENST00000356786 TSC22D4Q9Y3Q8 395 aa20.55■□□□□ 0.88
CCDC88B-202ENST00000356786 H0Y626 953 aa20.55■□□□□ 0.88
CCDC88B-202ENST00000356786 TRIM16O95361 564 aa20.55■□□□□ 0.88
CCDC88B-202ENST00000356786 KCNMA1Q12791 1236 aa20.55■□□□□ 0.88
CCDC88B-202ENST00000356786 RCSD1Q6JBY9 416 aa20.55■□□□□ 0.88
CCDC88B-202ENST00000356786 ABCB11O95342 1321 aa20.55■□□□□ 0.88
CCDC88B-202ENST00000356786 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.55■□□□□ 0.88
CCDC88B-202ENST00000356786 TFRCP02786 760 aaKnown RBP20.55■□□□□ 0.88
CCDC88B-202ENST00000356786 NSUN2Q08J23 767 aaKnown RBP eCLIP20.55■□□□□ 0.88
CCDC88B-202ENST00000356786 PRPF38AQ8NAV1 312 aaKnown RBP20.55■□□□□ 0.88
CCDC88B-202ENST00000356786 SYF2O95926 243 aaKnown RBP20.54■□□□□ 0.88
CCDC88B-202ENST00000356786 WEE2P0C1S8 567 aa20.54■□□□□ 0.88
CCDC88B-202ENST00000356786 TCN1P20061 433 aaPredicted RBP20.54■□□□□ 0.88
CCDC88B-202ENST00000356786 ZNF507Q8TCN5 953 aa20.54■□□□□ 0.88
CCDC88B-202ENST00000356786 RBAKQ9NYW8 714 aaPredicted RBP20.54■□□□□ 0.88
CCDC88B-202ENST00000356786 XPO7Q9UIA9 1087 aaKnown RBP20.54■□□□□ 0.88
CCDC88B-202ENST00000356786 ZHX2Q9Y6X8 837 aa20.54■□□□□ 0.88
CCDC88B-202ENST00000356786 KCNN4O15554 427 aa20.54■□□□□ 0.88
CCDC88B-202ENST00000356786 CYP19A1P11511 503 aaPredicted RBP20.54■□□□□ 0.88
CCDC88B-202ENST00000356786 SERPINB10P48595 397 aa20.54■□□□□ 0.88
CCDC88B-202ENST00000356786 KRT76Q01546 638 aa20.54■□□□□ 0.88
CCDC88B-202ENST00000356786 TAP1Q03518 808 aa20.54■□□□□ 0.88
CCDC88B-202ENST00000356786 PID1Q7Z2X4 250 aa20.54■□□□□ 0.88
CCDC88B-202ENST00000356786 SLC13A5Q86YT5 568 aaPredicted RBP20.54■□□□□ 0.88
CCDC88B-202ENST00000356786 RNF139Q8WU17 664 aa20.54■□□□□ 0.88
CCDC88B-202ENST00000356786 CELF1Q92879 486 aaKnown RBP20.54■□□□□ 0.88
CCDC88B-202ENST00000356786 PAX7P23759 505 aa20.54■□□□□ 0.88
CCDC88B-202ENST00000356786 CDR2LQ86X02 465 aaPredicted RBP20.54■□□□□ 0.88
CCDC88B-202ENST00000356786 GPD1LQ8N335 351 aa20.54■□□□□ 0.88
CCDC88B-202ENST00000356786 F5H6K3 240 aa20.53■□□□□ 0.88
CCDC88B-202ENST00000356786 MYBP10242 640 aa20.53■□□□□ 0.88
CCDC88B-202ENST00000356786 KLRC3Q07444 240 aa20.53■□□□□ 0.88
CCDC88B-202ENST00000356786 C12orf60Q5U649 245 aa20.53■□□□□ 0.88
CCDC88B-202ENST00000356786 FLAD1Q8NFF5 587 aa20.53■□□□□ 0.88
CCDC88B-202ENST00000356786 PIK3R5Q8WYR1 880 aa20.53■□□□□ 0.88
CCDC88B-202ENST00000356786 E2F7Q96AV8 911 aa20.53■□□□□ 0.88
CCDC88B-202ENST00000356786 UNC45AQ9H3U1 944 aa20.53■□□□□ 0.88
CCDC88B-202ENST00000356786 UBE2Q2LH0YL09 131 aa20.53■□□□□ 0.88
CCDC88B-202ENST00000356786 SNRPAP09012 282 aaKnown RBP20.53■□□□□ 0.88
CCDC88B-202ENST00000356786 DSG1Q02413 1049 aa20.53■□□□□ 0.88
CCDC88B-202ENST00000356786 INPP5AQ14642 412 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms