RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 TAF3Q5VWG9 929 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 SPRED2Q7Z698 418 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 BRSK2Q8IWQ3 736 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 ANKLE1Q8NAG6 615 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.94□□□□□ -0.823e-7■■■□□ 18.7
USP4-202ENST00000351842 HTATIP2Q9BUP3 242 aa9.94□□□□□ -0.82
USP4-202ENST00000351842 METTL14Q9HCE5 456 aaKnown RBP9.94□□□□□ -0.82
USP4-202ENST00000351842 TMCO5BA8MYB1 307 aa9.93□□□□□ -0.82
USP4-202ENST00000351842 PITPNM1O00562 1244 aa9.93□□□□□ -0.82
USP4-202ENST00000351842 CBFA2T2O43439 604 aa9.93□□□□□ -0.82
USP4-202ENST00000351842 GNA14O95837 355 aa9.93□□□□□ -0.82
USP4-202ENST00000351842 CETN1Q12798 172 aa9.93□□□□□ -0.82
USP4-202ENST00000351842 C9orf50Q5SZB4 431 aa9.93□□□□□ -0.82
USP4-202ENST00000351842 FAM109BQ6ICB4 259 aaPredicted RBP9.93□□□□□ -0.82
USP4-202ENST00000351842 SLC24A5Q71RS6 500 aa9.93□□□□□ -0.82
USP4-202ENST00000351842 FRMD5Q7Z6J6 570 aa9.93□□□□□ -0.82
USP4-202ENST00000351842 IMPG2Q9BZV3 1241 aa9.93□□□□□ -0.82
USP4-202ENST00000351842 DPP3Q9NY33 737 aa9.93□□□□□ -0.82
USP4-202ENST00000351842 FHOD1Q9Y613 1164 aa9.93□□□□□ -0.82
USP4-202ENST00000351842 PDGFRBP09619 1106 aa9.93□□□□□ -0.82
USP4-202ENST00000351842 ATF7P17544 494 aaPredicted RBP9.93□□□□□ -0.82
USP4-202ENST00000351842 FXR1P51114 621 aaKnown RBP eCLIP9.93□□□□□ -0.82
USP4-202ENST00000351842 CLCNKBP51801 687 aa9.93□□□□□ -0.82
USP4-202ENST00000351842 DCAF4L1Q3SXM0 396 aa9.93□□□□□ -0.82
USP4-202ENST00000351842 C1orf220Q5T0J3 134 aa9.93□□□□□ -0.82
USP4-202ENST00000351842 KRT39Q6A163 491 aa9.93□□□□□ -0.82
USP4-202ENST00000351842 GBP6Q6ZN66 633 aa9.93□□□□□ -0.82
USP4-202ENST00000351842 APTXQ7Z2E3 356 aaKnown RBP9.93□□□□□ -0.82
USP4-202ENST00000351842 PHLDB2Q86SQ0 1253 aa9.93□□□□□ -0.82
USP4-202ENST00000351842 ECHDC2Q86YB7 292 aa9.93□□□□□ -0.82
USP4-202ENST00000351842 HACE1Q8IYU2 909 aa9.93□□□□□ -0.82
USP4-202ENST00000351842 C17orf53Q8N3J3 647 aaPredicted RBP9.93□□□□□ -0.82
USP4-202ENST00000351842 LIMA1Q9UHB6 759 aaKnown RBP9.93□□□□□ -0.82
USP4-202ENST00000351842 AJAP1Q9UKB5 411 aaPredicted RBP9.93□□□□□ -0.82
USP4-202ENST00000351842 CITO14578 2027 aa9.93□□□□□ -0.82
USP4-202ENST00000351842 FRMPD3Q5JV73 1810 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 A0A0U1RQF3 1178 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.92□□□□□ -0.82
USP4-202ENST00000351842 ITGB1P05556 798 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 KRT9P35527 623 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 BRCC3P46736 316 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 FPGSQ05932 587 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 CCDC142Q17RM4 750 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 ZNF699Q32M78 642 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 WDR44Q5JSH3 913 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 USP37Q86T82 979 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 ARHGEF19Q8IW93 802 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 C1orf127Q8N9H9 656 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 TOX2Q96NM4 488 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 LPIN3Q9BQK8 851 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 NFKBIZQ9BYH8 718 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 INTS2Q9H0H0 1204 aaKnown RBP9.92□□□□□ -0.82
USP4-202ENST00000351842 TRIOO75962 3097 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 A0A1B0GTH6 734 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 TTC26A0AVF1 554 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 B4GALT3O60512 393 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 GFPT2O94808 682 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 THP07101 528 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 ACAT1P24752 427 aaKnown RBP9.92□□□□□ -0.82
USP4-202ENST00000351842 NR1I3Q14994 352 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 PLEKHG4Q58EX7 1191 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 SPECC1LQ69YQ0 1117 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 MFSD5Q6N075 450 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 APBB1IPQ7Z5R6 666 aaPredicted RBP9.92□□□□□ -0.82
USP4-202ENST00000351842 FBXL13Q8NEE6 735 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.92□□□□□ -0.82
USP4-202ENST00000351842 PTGESO14684 152 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 FAM189A1O60320 539 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 CD19P15391 556 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 PROZP22891 400 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 GRM5P41594 1212 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 KCNMA1Q12791 1236 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 BTG3Q14201 252 aaPredicted RBP9.92□□□□□ -0.82
USP4-202ENST00000351842 CLLU1OSQ5K130 101 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 TTC16Q8NEE8 873 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 PDCL3Q9H2J4 239 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 C1orf112Q9NSG2 853 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 RAB20Q9NX57 234 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 ZKSCAN5Q9Y2L8 839 aa9.92□□□□□ -0.82
USP4-202ENST00000351842 PIK3R2O00459 728 aa9.91□□□□□ -0.82
USP4-202ENST00000351842 SLC16A3O15427 465 aaKnown RBP9.91□□□□□ -0.82
USP4-202ENST00000351842 FGBP02675 491 aa9.91□□□□□ -0.82
USP4-202ENST00000351842 TPM1P09493 284 aa9.91□□□□□ -0.82
USP4-202ENST00000351842 PON1P27169 355 aa9.91□□□□□ -0.82
USP4-202ENST00000351842 NOP14P78316 857 aaKnown RBP9.91□□□□□ -0.82
USP4-202ENST00000351842 PSMD6Q15008 389 aa9.91□□□□□ -0.82
USP4-202ENST00000351842 FAM187BQ17R55 369 aa9.91□□□□□ -0.82
USP4-202ENST00000351842 TRIM65Q6PJ69 517 aa9.91□□□□□ -0.82
USP4-202ENST00000351842 C16orf59Q7L2K0 433 aa9.91□□□□□ -0.82
USP4-202ENST00000351842 HPDLQ96IR7 371 aa9.91□□□□□ -0.82
USP4-202ENST00000351842 PLCB1Q9NQ66 1216 aa9.91□□□□□ -0.82
USP4-202ENST00000351842 SCN1AP35498 2009 aa9.91□□□□□ -0.82
USP4-202ENST00000351842 PIGRP01833 764 aa9.91□□□□□ -0.82
USP4-202ENST00000351842 POU5F1BQ06416 359 aa9.91□□□□□ -0.82
USP4-202ENST00000351842 C2CD6Q53TS8 623 aa9.91□□□□□ -0.82
USP4-202ENST00000351842 TMEM270Q6UE05 265 aa9.91□□□□□ -0.82
USP4-202ENST00000351842 IFNLR1Q8IU57 520 aaPredicted RBP9.91□□□□□ -0.82
USP4-202ENST00000351842 PASD1Q8IV76 773 aa9.91□□□□□ -0.82
USP4-202ENST00000351842 CCDC150Q8NCX0 1101 aa9.91□□□□□ -0.82
USP4-202ENST00000351842 SNX27Q96L92 541 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms