RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 PMS2P54278 862 aa20.68■□□□□ 0.9
COL9A3-201ENST00000343916 DRG2P55039 364 aaKnown RBP20.68■□□□□ 0.9
COL9A3-201ENST00000343916 CAPSQ13938 189 aa20.68■□□□□ 0.9
COL9A3-201ENST00000343916 TUBB8Q3ZCM7 444 aa20.68■□□□□ 0.9
COL9A3-201ENST00000343916 SH3D19Q5HYK7 790 aa20.68■□□□□ 0.9
COL9A3-201ENST00000343916 ERLIN2O94905 339 aa20.67■□□□□ 0.9
COL9A3-201ENST00000343916 MAGOHP61326 146 aaKnown RBP20.67■□□□□ 0.9
COL9A3-201ENST00000343916 SNX1Q13596 522 aa20.67■□□□□ 0.9
COL9A3-201ENST00000343916 CUL2Q13617 745 aa20.67■□□□□ 0.9
COL9A3-201ENST00000343916 CYP1B1Q16678 543 aa20.67■□□□□ 0.9
COL9A3-201ENST00000343916 C11orf70Q9BRQ4 267 aa20.67■□□□□ 0.9
COL9A3-201ENST00000343916 PCDHB4Q9Y5E5 795 aa20.67■□□□□ 0.9
COL9A3-201ENST00000343916 IGKV6D-21A0A0A0MT36 114 aa20.67■□□□□ 0.9
COL9A3-201ENST00000343916 A0A0B4J269 797 aa20.67■□□□□ 0.9
COL9A3-201ENST00000343916 SOWAHBA6NEL2 793 aa20.67■□□□□ 0.9
COL9A3-201ENST00000343916 O00370 1275 aa20.67■□□□□ 0.9
COL9A3-201ENST00000343916 PODXLO00592 558 aa20.67■□□□□ 0.9
COL9A3-201ENST00000343916 MARK3P27448 753 aa20.67■□□□□ 0.9
COL9A3-201ENST00000343916 ENPEPQ07075 957 aa20.67■□□□□ 0.9
COL9A3-201ENST00000343916 LY6KQ17RY6 165 aa20.67■□□□□ 0.9
COL9A3-201ENST00000343916 RNF25Q96BH1 459 aaPredicted RBP20.67■□□□□ 0.9
COL9A3-201ENST00000343916 HERPUD2Q9BSE4 406 aa20.67■□□□□ 0.9
COL9A3-201ENST00000343916 PAGR1Q9BTK6 254 aa20.67■□□□□ 0.9
COL9A3-201ENST00000343916 NIFKQ9BYG3 293 aaKnown RBP20.67■□□□□ 0.9
COL9A3-201ENST00000343916 NUB1Q9Y5A7 615 aa20.67■□□□□ 0.9
COL9A3-201ENST00000343916 WDR90Q96KV7 1748 aa20.66■□□□□ 0.9
COL9A3-201ENST00000343916 TNFSF9P41273 254 aa20.66■□□□□ 0.9
COL9A3-201ENST00000343916 STAT5BP51692 787 aa20.66■□□□□ 0.9
COL9A3-201ENST00000343916 PTGISQ16647 500 aa20.66■□□□□ 0.9
COL9A3-201ENST00000343916 SLFN12LQ6IEE8 588 aa20.66■□□□□ 0.9
COL9A3-201ENST00000343916 EFCAB13Q8IY85 973 aa20.66■□□□□ 0.9
COL9A3-201ENST00000343916 UHMK1Q8TAS1 419 aaKnown RBP20.66■□□□□ 0.9
COL9A3-201ENST00000343916 ATG4AQ8WYN0 398 aa20.66■□□□□ 0.9
COL9A3-201ENST00000343916 EPN3Q9H201 632 aa20.66■□□□□ 0.9
COL9A3-201ENST00000343916 PABPC3Q9H361 631 aaKnown RBP20.66■□□□□ 0.9
COL9A3-201ENST00000343916 SEMA4AQ9H3S1 761 aa20.66■□□□□ 0.9
COL9A3-201ENST00000343916 PPANQ9NQ55 473 aaKnown RBP20.66■□□□□ 0.9
COL9A3-201ENST00000343916 SLC12A6Q9UHW9 1150 aa20.66■□□□□ 0.9
COL9A3-201ENST00000343916 PIGRP01833 764 aa20.66■□□□□ 0.9
COL9A3-201ENST00000343916 CYP1A1P04798 512 aaPredicted RBP20.66■□□□□ 0.9
COL9A3-201ENST00000343916 ABCD1P33897 745 aa20.66■□□□□ 0.9
COL9A3-201ENST00000343916 TCF7P36402 384 aaPredicted RBP20.66■□□□□ 0.9
COL9A3-201ENST00000343916 NOP14P78316 857 aaKnown RBP20.66■□□□□ 0.9
COL9A3-201ENST00000343916 CENPCQ03188 943 aa20.66■□□□□ 0.9
COL9A3-201ENST00000343916 MON1BQ7L1V2 547 aa20.66■□□□□ 0.9
COL9A3-201ENST00000343916 ZBTB33Q86T24 672 aa20.66■□□□□ 0.9
COL9A3-201ENST00000343916 FAM107BQ9H098 131 aa20.66■□□□□ 0.9
COL9A3-201ENST00000343916 ADGRA2Q96PE1 1338 aa20.66■□□□□ 0.9
COL9A3-201ENST00000343916 CNTNAP2Q9UHC6 1331 aa20.66■□□□□ 0.9
COL9A3-201ENST00000343916 CAND2O75155 1236 aa20.65■□□□□ 0.9
COL9A3-201ENST00000343916 FGFR4P22455 802 aa20.65■□□□□ 0.9
COL9A3-201ENST00000343916 GNA15P30679 374 aa20.65■□□□□ 0.9
COL9A3-201ENST00000343916 SLC29A2Q14542 456 aa20.65■□□□□ 0.9
COL9A3-201ENST00000343916 TARBP2Q15633 366 aaKnown RBP20.65■□□□□ 0.9
COL9A3-201ENST00000343916 SGO2Q562F6 1265 aa20.65■□□□□ 0.9
COL9A3-201ENST00000343916 GADL1Q6ZQY3 521 aa20.65■□□□□ 0.9
COL9A3-201ENST00000343916 TRIM50Q86XT4 487 aa20.65■□□□□ 0.9
COL9A3-201ENST00000343916 CHST7Q9NS84 486 aa20.65■□□□□ 0.9
COL9A3-201ENST00000343916 KCNG1Q9UIX4 513 aa20.65■□□□□ 0.9
COL9A3-201ENST00000343916 SMIM23A6NLE4 172 aa20.65■□□□□ 0.9
COL9A3-201ENST00000343916 GJB6O95452 261 aa20.65■□□□□ 0.9
COL9A3-201ENST00000343916 ZNF677Q86XU0 584 aa20.65■□□□□ 0.9
COL9A3-201ENST00000343916 MICALL1Q8N3F8 863 aa20.65■□□□□ 0.9
COL9A3-201ENST00000343916 PRPF31Q8WWY3 499 aaKnown RBP20.65■□□□□ 0.9
COL9A3-201ENST00000343916 FAM81BQ96LP2 452 aa20.65■□□□□ 0.9
COL9A3-201ENST00000343916 SPATC1LQ9H0A9 340 aa20.65■□□□□ 0.9
COL9A3-201ENST00000343916 PPP2R3BQ9Y5P8 575 aa20.65■□□□□ 0.9
COL9A3-201ENST00000343916 E7EVH7 732 aa20.64■□□□□ 0.9
COL9A3-201ENST00000343916 NF2P35240 595 aa20.64■□□□□ 0.9
COL9A3-201ENST00000343916 BPIFB4P59827 614 aa20.64■□□□□ 0.9
COL9A3-201ENST00000343916 PPP1R7Q15435 360 aa20.64■□□□□ 0.9
COL9A3-201ENST00000343916 AGBL2Q5U5Z8 902 aa20.64■□□□□ 0.9
COL9A3-201ENST00000343916 TADA2BQ86TJ2 420 aa20.64■□□□□ 0.9
COL9A3-201ENST00000343916 RIOX2Q8IUF8 465 aa20.64■□□□□ 0.9
COL9A3-201ENST00000343916 ARFGAP2Q8N6H7 521 aa20.64■□□□□ 0.9
COL9A3-201ENST00000343916 IPO4Q8TEX9 1081 aaKnown RBP20.64■□□□□ 0.9
COL9A3-201ENST00000343916 ZNF668Q96K58 619 aaPredicted RBP20.64■□□□□ 0.9
COL9A3-201ENST00000343916 CGRRF1Q99675 332 aa20.64■□□□□ 0.9
COL9A3-201ENST00000343916 AVENQ9NQS1 362 aaPredicted RBP20.64■□□□□ 0.9
COL9A3-201ENST00000343916 LOC285556D6RIA3 1793 aa20.64■□□□□ 0.89
COL9A3-201ENST00000343916 TLDC2A0PJX2 215 aa20.64■□□□□ 0.89
COL9A3-201ENST00000343916 FSCN2O14926 492 aa20.64■□□□□ 0.89
COL9A3-201ENST00000343916 ADCY3O60266 1144 aa20.64■□□□□ 0.89
COL9A3-201ENST00000343916 ECEL1O95672 775 aa20.64■□□□□ 0.89
COL9A3-201ENST00000343916 LDHAP00338 332 aaKnown RBP20.64■□□□□ 0.89
COL9A3-201ENST00000343916 CST3P01034 146 aaPredicted RBP20.64■□□□□ 0.89
COL9A3-201ENST00000343916 CLTAP09496 248 aa20.64■□□□□ 0.89
COL9A3-201ENST00000343916 PPP2R2AP63151 447 aa20.64■□□□□ 0.89
COL9A3-201ENST00000343916 DENND2CQ68D51 928 aa20.64■□□□□ 0.89
COL9A3-201ENST00000343916 GPC2Q8N158 579 aa20.64■□□□□ 0.89
COL9A3-201ENST00000343916 RBBP8NLQ8NC74 664 aaPredicted RBP20.64■□□□□ 0.89
COL9A3-201ENST00000343916 FAM212AQ96EL1 285 aa20.64■□□□□ 0.89
COL9A3-201ENST00000343916 TCHPQ9BT92 498 aa20.64■□□□□ 0.89
COL9A3-201ENST00000343916 LRRC19Q9H756 370 aa20.64■□□□□ 0.89
COL9A3-201ENST00000343916 NRBP2Q9NSY0 501 aa20.64■□□□□ 0.89
COL9A3-201ENST00000343916 FAM169AQ9Y6X4 670 aa20.64■□□□□ 0.89
COL9A3-201ENST00000343916 IRF6O14896 467 aa20.63■□□□□ 0.89
COL9A3-201ENST00000343916 ARIH2O95376 493 aa20.63■□□□□ 0.89
COL9A3-201ENST00000343916 PGK2P07205 417 aa20.63■□□□□ 0.89
COL9A3-201ENST00000343916 SRGAP2CP0DJJ0 459 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms