RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 MTIF2P46199 727 aaKnown RBP23.97■■□□□ 1.43
SDC3-202ENST00000339394 GAS2L3Q86XJ1 694 aa23.97■■□□□ 1.43
SDC3-202ENST00000339394 PAAF1Q9BRP4 392 aa23.97■■□□□ 1.43
SDC3-202ENST00000339394 DPP3Q9NY33 737 aa23.97■■□□□ 1.43
SDC3-202ENST00000339394 YBX2Q9Y2T7 364 aaKnown RBP23.97■■□□□ 1.43
SDC3-202ENST00000339394 UTP18Q9Y5J1 556 aaKnown RBP eCLIP23.97■■□□□ 1.43
SDC3-202ENST00000339394 TNNC2P02585 160 aa23.96■■□□□ 1.43
SDC3-202ENST00000339394 C4BPAP04003 597 aaKnown RBP23.96■■□□□ 1.43
SDC3-202ENST00000339394 CA3P07451 260 aa23.96■■□□□ 1.43
SDC3-202ENST00000339394 LINC00271P0C7V0 271 aa23.96■■□□□ 1.43
SDC3-202ENST00000339394 CDK11BP21127 795 aaKnown RBP23.96■■□□□ 1.43
SDC3-202ENST00000339394 GCLMP48507 274 aa23.96■■□□□ 1.43
SDC3-202ENST00000339394 AP3M2P53677 418 aa23.96■■□□□ 1.43
SDC3-202ENST00000339394 SPOUT1Q5T280 376 aaKnown RBP23.96■■□□□ 1.43
SDC3-202ENST00000339394 TRAPPC11Q7Z392 1133 aa23.96■■□□□ 1.43
SDC3-202ENST00000339394 C1orf127Q8N9H9 656 aa23.96■■□□□ 1.43
SDC3-202ENST00000339394 MMRN2Q9H8L6 949 aa23.96■■□□□ 1.43
SDC3-202ENST00000339394 LINC01553A4QN01 128 aa23.95■■□□□ 1.43
SDC3-202ENST00000339394 GOLGA6L19H0YKK7 550 aa23.95■■□□□ 1.43
SDC3-202ENST00000339394 ALDH2P05091 517 aa23.95■■□□□ 1.43
SDC3-202ENST00000339394 ATP1A3P13637 1013 aa23.95■■□□□ 1.43
SDC3-202ENST00000339394 CLCNKBP51801 687 aa23.95■■□□□ 1.43
SDC3-202ENST00000339394 SCARA3Q6AZY7 606 aa23.95■■□□□ 1.43
SDC3-202ENST00000339394 SV2AQ7L0J3 742 aa23.95■■□□□ 1.43
SDC3-202ENST00000339394 RABGGTAQ92696 567 aa23.95■■□□□ 1.43
SDC3-202ENST00000339394 CLP1Q92989 425 aaKnown RBP23.95■■□□□ 1.43
SDC3-202ENST00000339394 TUBGCP2Q9BSJ2 902 aa23.95■■□□□ 1.43
SDC3-202ENST00000339394 GTF3C5Q9Y5Q8 519 aaPredicted RBP23.95■■□□□ 1.43
SDC3-202ENST00000339394 STX10O60499 249 aa23.95■■□□□ 1.42
SDC3-202ENST00000339394 ARHGEF15O94989 841 aa23.95■■□□□ 1.42
SDC3-202ENST00000339394 GALTP07902 379 aa23.95■■□□□ 1.42
SDC3-202ENST00000339394 LRPAP1P30533 357 aa23.95■■□□□ 1.42
SDC3-202ENST00000339394 GTF2H1P32780 548 aa23.95■■□□□ 1.42
SDC3-202ENST00000339394 PBX3P40426 434 aa23.95■■□□□ 1.42
SDC3-202ENST00000339394 OR1G1P47890 313 aa23.95■■□□□ 1.42
SDC3-202ENST00000339394 ALDH7A1P49419 539 aaKnown RBP23.95■■□□□ 1.42
SDC3-202ENST00000339394 BCAR1P56945 870 aa23.95■■□□□ 1.42
SDC3-202ENST00000339394 KCNH2Q12809 1159 aa23.95■■□□□ 1.42
SDC3-202ENST00000339394 UPP1Q16831 310 aa23.95■■□□□ 1.42
SDC3-202ENST00000339394 TDRD10Q5VZ19 366 aaKnown RBP23.95■■□□□ 1.42
SDC3-202ENST00000339394 C15orf39Q6ZRI6 1047 aa23.95■■□□□ 1.42
SDC3-202ENST00000339394 CXorf38Q8TB03 319 aa23.95■■□□□ 1.42
SDC3-202ENST00000339394 TMEM8AQ9HCN3 771 aa23.95■■□□□ 1.42
SDC3-202ENST00000339394 MSRAQ9UJ68 235 aa23.95■■□□□ 1.42
SDC3-202ENST00000339394 CDH23Q9H251 3354 aa23.94■■□□□ 1.42
SDC3-202ENST00000339394 NRP1O14786 923 aa23.94■■□□□ 1.42
SDC3-202ENST00000339394 ITGB3P05106 788 aa23.94■■□□□ 1.42
SDC3-202ENST00000339394 RPL9P32969 192 aaKnown RBP23.94■■□□□ 1.42
SDC3-202ENST00000339394 SLC11A1P49279 550 aa23.94■■□□□ 1.42
SDC3-202ENST00000339394 SMAD3P84022 425 aaKnown RBP23.94■■□□□ 1.42
SDC3-202ENST00000339394 RAB30Q15771 203 aa23.94■■□□□ 1.42
SDC3-202ENST00000339394 LRIT3Q3SXY7 679 aa23.94■■□□□ 1.42
SDC3-202ENST00000339394 ZACNQ401N2 412 aa23.94■■□□□ 1.42
SDC3-202ENST00000339394 CBWD6Q4V339 395 aa23.94■■□□□ 1.42
SDC3-202ENST00000339394 CBWD3Q5JTY5 395 aa23.94■■□□□ 1.42
SDC3-202ENST00000339394 CBWD5Q5RIA9 395 aa23.94■■□□□ 1.42
SDC3-202ENST00000339394 KRT39Q6A163 491 aa23.94■■□□□ 1.42
SDC3-202ENST00000339394 DDX27Q96GQ7 796 aaKnown RBP23.94■■□□□ 1.42
SDC3-202ENST00000339394 UROC1Q96N76 676 aa23.94■■□□□ 1.42
SDC3-202ENST00000339394 TMEM175Q9BSA9 504 aa23.94■■□□□ 1.42
SDC3-202ENST00000339394 SIX4Q9UIU6 781 aa23.94■■□□□ 1.42
SDC3-202ENST00000339394 ITGA11Q9UKX5 1188 aa23.94■■□□□ 1.42
SDC3-202ENST00000339394 CITO14578 2027 aa23.93■■□□□ 1.42
SDC3-202ENST00000339394 CST3P01034 146 aaPredicted RBP23.93■■□□□ 1.42
SDC3-202ENST00000339394 PRKCSHP14314 528 aaPredicted RBP23.93■■□□□ 1.42
SDC3-202ENST00000339394 TPM4P67936 248 aa23.93■■□□□ 1.42
SDC3-202ENST00000339394 KRT31Q15323 416 aa23.93■■□□□ 1.42
SDC3-202ENST00000339394 MAN2A1Q16706 1144 aa23.93■■□□□ 1.42
SDC3-202ENST00000339394 C9orf57Q5W0N0 161 aa23.93■■□□□ 1.42
SDC3-202ENST00000339394 KCNT2Q6UVM3 1135 aa23.93■■□□□ 1.42
SDC3-202ENST00000339394 FAN1Q9Y2M0 1017 aa23.93■■□□□ 1.42
SDC3-202ENST00000339394 PRG3Q9Y2Y8 225 aaPredicted RBP23.93■■□□□ 1.42
SDC3-202ENST00000339394 FNDC1Q4ZHG4 1894 aaPredicted RBP23.93■■□□□ 1.42
SDC3-202ENST00000339394 CHD9Q3L8U1 2897 aa23.93■■□□□ 1.42
SDC3-202ENST00000339394 ANO9A1A5B4 782 aa23.92■■□□□ 1.42
SDC3-202ENST00000339394 LRRC10BA6NIK2 292 aa23.92■■□□□ 1.42
SDC3-202ENST00000339394 NT5C1B-RDH14C9J2C7 533 aa23.92■■□□□ 1.42
SDC3-202ENST00000339394 F8W810 466 aa23.92■■□□□ 1.42
SDC3-202ENST00000339394 PODXLO00592 558 aa23.92■■□□□ 1.42
SDC3-202ENST00000339394 PIRO00625 290 aa23.92■■□□□ 1.42
SDC3-202ENST00000339394 AFPP02771 609 aaKnown RBP23.92■■□□□ 1.42
SDC3-202ENST00000339394 KRT19P08727 400 aa23.92■■□□□ 1.42
SDC3-202ENST00000339394 LAG3P18627 525 aa23.92■■□□□ 1.42
SDC3-202ENST00000339394 IGFBP6P24592 240 aaPredicted RBP23.92■■□□□ 1.42
SDC3-202ENST00000339394 POLR2BP30876 1174 aaKnown RBP23.92■■□□□ 1.42
SDC3-202ENST00000339394 FMO5P49326 533 aa23.92■■□□□ 1.42
SDC3-202ENST00000339394 MXI1P50539 228 aa23.92■■□□□ 1.42
SDC3-202ENST00000339394 BIRC3Q13489 604 aa23.92■■□□□ 1.42
SDC3-202ENST00000339394 MIIPQ5JXC2 388 aa23.92■■□□□ 1.42
SDC3-202ENST00000339394 ANKRD20A12PQ8NF67 263 aa23.92■■□□□ 1.42
SDC3-202ENST00000339394 RBSNQ9H1K0 784 aa23.92■■□□□ 1.42
SDC3-202ENST00000339394 TAB2Q9NYJ8 693 aa23.92■■□□□ 1.42
SDC3-202ENST00000339394 LIMA1Q9UHB6 759 aaKnown RBP23.92■■□□□ 1.42
SDC3-202ENST00000339394 PPEF2O14830 753 aa23.91■■□□□ 1.42
SDC3-202ENST00000339394 PHACTR2O75167 634 aa23.91■■□□□ 1.42
SDC3-202ENST00000339394 B3GAT3O94766 335 aa23.91■■□□□ 1.42
SDC3-202ENST00000339394 DNAJB2P25686 324 aa23.91■■□□□ 1.42
SDC3-202ENST00000339394 TAP1Q03518 808 aa23.91■■□□□ 1.42
SDC3-202ENST00000339394 VWA3BQ502W6 1294 aa23.91■■□□□ 1.42
SDC3-202ENST00000339394 TMEM173Q86WV6 379 aaPredicted RBP23.91■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 112.7 ms