RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 YY1P25490 414 aa14.29□□□□□ -0.12
CCDC88C-201ENST00000331194 MYL7Q01449 175 aa14.29□□□□□ -0.12
CCDC88C-201ENST00000331194 MTM1Q13496 603 aa14.29□□□□□ -0.12
CCDC88C-201ENST00000331194 ZNF804AQ7Z570 1209 aa14.29□□□□□ -0.12
CCDC88C-201ENST00000331194 TRABD2AQ86V40 505 aa14.29□□□□□ -0.12
CCDC88C-201ENST00000331194 SYCP3Q8IZU3 236 aa14.29□□□□□ -0.12
CCDC88C-201ENST00000331194 WNT8AQ9H1J5 351 aa14.29□□□□□ -0.12
CCDC88C-201ENST00000331194 PCIF1Q9H4Z3 704 aa14.29□□□□□ -0.12
CCDC88C-201ENST00000331194 LGALS13Q9UHV8 139 aa14.29□□□□□ -0.12
CCDC88C-201ENST00000331194 SLC16A3O15427 465 aaKnown RBP14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 TBCAO75347 108 aaKnown RBP14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 CCNFP41002 786 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 RPS8P62241 208 aaKnown RBP14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 SLC34A1Q06495 639 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 PPP2R5CQ13362 524 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 THOC5Q13769 683 aaKnown RBP14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 SPARCL1Q14515 664 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 KIF22Q14807 665 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 KLF6Q99612 283 aaPredicted RBP14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 EURLQ9NYK6 297 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 hCG_2014768A0A024R1R8 64 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 GOLGA8RI6L899 631 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 ECE2O60344 883 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 HOXA7P31268 230 aaPredicted RBP14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 SPIRE1Q08AE8 756 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 C16orf86Q6ZW13 317 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 TTC7BQ86TV6 843 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 NOP9Q86U38 636 aaKnown RBP14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 SLC47A2Q86VL8 602 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 ZSWIM2Q8NEG5 633 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 ZNF75CPQ92670 426 aaPredicted RBP14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 HEY2Q9UBP5 337 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 ZNF232Q9UNY5 417 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 PNMA6FA0A0J9YX94 578 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 PLSCR1O15162 318 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 MAGEB2O15479 319 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 GYG2O15488 501 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 BANF1O75531 89 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 GGPS1O95749 300 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 LVRNQ6Q4G3 990 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 HS2ST1Q7LGA3 356 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 GLIS1Q8NBF1 620 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 FBXO27Q8NI29 283 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 PSPC1Q8WXF1 523 aaKnown RBP14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 TRAPPC9Q96Q05 1148 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 RBM15Q96T37 977 aaKnown RBP eCLIP14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 PREBQ9HCU5 417 aa14.28□□□□□ -0.12
CCDC88C-201ENST00000331194 PCNTO95613 3336 aa14.27□□□□□ -0.12
CCDC88C-201ENST00000331194 ROBO3Q96MS0 1386 aa14.27□□□□□ -0.12
CCDC88C-201ENST00000331194 MAGEA13PA6NCF6 341 aa14.27□□□□□ -0.12
CCDC88C-201ENST00000331194 CYP26A1O43174 497 aa14.27□□□□□ -0.12
CCDC88C-201ENST00000331194 LYNP07948 512 aa14.27□□□□□ -0.12
CCDC88C-201ENST00000331194 GYS1P13807 737 aa14.27□□□□□ -0.12
CCDC88C-201ENST00000331194 BTDP43251 543 aa14.27□□□□□ -0.12
CCDC88C-201ENST00000331194 RTP1P59025 263 aa14.27□□□□□ -0.12
CCDC88C-201ENST00000331194 OCRLQ01968 901 aa14.27□□□□□ -0.12
CCDC88C-201ENST00000331194 CLUL1Q15846 466 aa14.27□□□□□ -0.12
CCDC88C-201ENST00000331194 PDK4Q16654 411 aa14.27□□□□□ -0.12
CCDC88C-201ENST00000331194 EPC2Q52LR7 807 aa14.27□□□□□ -0.12
CCDC88C-201ENST00000331194 LMO3Q8TAP4 145 aa14.27□□□□□ -0.12
CCDC88C-201ENST00000331194 ZNF653Q96CK0 615 aa14.27□□□□□ -0.12
CCDC88C-201ENST00000331194 SAYSD1Q9NPB0 183 aa14.27□□□□□ -0.12
CCDC88C-201ENST00000331194 ARMCX1Q9P291 453 aa14.27□□□□□ -0.12
CCDC88C-201ENST00000331194 TRAFD1O14545 582 aaPredicted RBP14.27□□□□□ -0.13
CCDC88C-201ENST00000331194 ZSCAN5DPP0CG00 497 aa14.27□□□□□ -0.13
CCDC88C-201ENST00000331194 AKR1B1P15121 316 aa14.27□□□□□ -0.13
CCDC88C-201ENST00000331194 ADRA1DP25100 572 aa14.27□□□□□ -0.13
CCDC88C-201ENST00000331194 MAGEA4P43358 317 aa14.27□□□□□ -0.13
CCDC88C-201ENST00000331194 GCLMP48507 274 aa14.27□□□□□ -0.13
CCDC88C-201ENST00000331194 VPS52Q8N1B4 723 aa14.27□□□□□ -0.13
CCDC88C-201ENST00000331194 ATL2Q8NHH9 583 aa14.27□□□□□ -0.13
CCDC88C-201ENST00000331194 RPGRQ92834 1020 aaKnown RBP14.27□□□□□ -0.13
CCDC88C-201ENST00000331194 SETDB2Q96T68 719 aa14.27□□□□□ -0.13
CCDC88C-201ENST00000331194 CYTH2Q99418 400 aa14.27□□□□□ -0.13
CCDC88C-201ENST00000331194 BTBD10Q9BSF8 475 aa14.27□□□□□ -0.13
CCDC88C-201ENST00000331194 MAK16Q9BXY0 300 aaKnown RBP14.27□□□□□ -0.13
CCDC88C-201ENST00000331194 TLE6Q9H808 572 aa14.27□□□□□ -0.13
CCDC88C-201ENST00000331194 SCN7AQ01118 1682 aa14.27□□□□□ -0.13
CCDC88C-201ENST00000331194 EML1O00423 815 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 USP1O94782 785 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 MTA1Q13330 715 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 IZUMO3Q5VZ72 239 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 ISLR2Q6UXK2 745 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 MYLK4Q86YV6 388 aaPredicted RBP14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 PTPRN2Q92932 1015 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 MCUR1Q96AQ8 359 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 BICD1Q96G01 975 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 CLPTM1LQ96KA5 538 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 TRAIPQ9BWF2 469 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 ARFGEF1Q9Y6D6 1849 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 FSCN2O14926 492 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 TCEA3O75764 348 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 SERPINB3P29508 390 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 GJC1P36383 396 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 INHBCP55103 352 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 TBC1D10BQ4KMP7 808 aaPredicted RBP14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 MDH1BQ5I0G3 518 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 PCNX4Q63HM2 1172 aa14.26□□□□□ -0.13
CCDC88C-201ENST00000331194 DPP8Q6V1X1 898 aaPredicted RBP14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms