RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 DBR1Q9UK59 544 aaKnown RBP11.6□□□□□ -0.55
LSM3-201ENST00000306024 UBIAD1Q9Y5Z9 338 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 NPHP3-ACAD11A0A0J9YXS1 232 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 ANKRD33BA6NCL7 494 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 F8VZ95 297 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 FGGP02679 453 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 TMED1Q13445 227 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 CFAP157Q5JU67 520 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 SLC7A3Q8WY07 619 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 RBM41Q96IZ5 413 aaKnown RBP11.6□□□□□ -0.55
LSM3-201ENST00000306024 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.6□□□□□ -0.55
LSM3-201ENST00000306024 AP5M1Q9H0R1 490 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 SPC25Q9HBM1 224 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 AGAP1Q9UPQ3 857 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 ATP9AO75110 1047 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 RNF8O76064 485 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 PYGBP11216 843 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 DR1Q01658 176 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 NIPA1Q7RTP0 329 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 ANKRD27Q96NW4 1050 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 PNMA5Q96PV4 448 aa11.6□□□□□ -0.55
LSM3-201ENST00000306024 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.6□□□□□ -0.55
LSM3-201ENST00000306024 K7ENM7 598 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 ITGBL1O95965 494 aaPredicted RBP11.59□□□□□ -0.55
LSM3-201ENST00000306024 HNRNPCP07910 306 aaKnown RBP eCLIP11.59□□□□□ -0.55
LSM3-201ENST00000306024 SCNN1BP51168 640 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 ACTR2P61160 394 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 FAM110CQ1W6H9 321 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 ZNF507Q8TCN5 953 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 KIFAP3Q92845 792 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 CCDC97Q96F63 343 aaPredicted RBP11.59□□□□□ -0.55
LSM3-201ENST00000306024 POLR3CQ9BUI4 534 aaPredicted RBP11.59□□□□□ -0.55
LSM3-201ENST00000306024 PITPNM3Q9BZ71 974 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 PARVGQ9HBI0 331 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 ADAM22Q9P0K1 906 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 SSC5DA1L4H1 1573 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 MAP3K7O43318 606 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 TRPA1O75762 1119 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 PSMD10O75832 226 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 BCRP11274 1271 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 YWHABP31946 246 aaKnown RBP11.59□□□□□ -0.55
LSM3-201ENST00000306024 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.59□□□□□ -0.55
LSM3-201ENST00000306024 PHLDB3Q6NSJ2 640 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 ARMCX2Q7L311 632 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 APBB1IPQ7Z5R6 666 aaPredicted RBP11.59□□□□□ -0.55
LSM3-201ENST00000306024 RASAL3Q86YV0 1011 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 SYCE1Q8N0S2 351 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 SEPT1Q8WYJ6 367 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 TGS1Q96RS0 853 aaKnown RBP11.59□□□□□ -0.55
LSM3-201ENST00000306024 PIDD1Q9HB75 910 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 PVALEFA0A1B0GWK0 134 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 A0A1W2PQJ5 194 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 ALDH1A1P00352 501 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 UBTFL6P0CB48 400 aaPredicted RBP11.59□□□□□ -0.55
LSM3-201ENST00000306024 PSMC6P62333 389 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 CDK17Q00537 523 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 ZNF746Q6NUN9 644 aaPredicted RBP11.59□□□□□ -0.55
LSM3-201ENST00000306024 PDXDC1Q6P996 788 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 KCNK18Q7Z418 384 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 TMC3Q7Z5M5 1100 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 GPR142Q7Z601 462 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 SFR1Q86XK3 245 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 IRF2BP1Q8IU81 584 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 DTX3LQ8TDB6 740 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 ERP27Q96DN0 273 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 CAPNS2Q96L46 248 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 ERGIC2Q96RQ1 377 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 CCDC77Q9BR77 488 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 KBTBD4Q9NVX7 518 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 TBK1Q9UHD2 729 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 SLC12A4Q9UP95 1085 aa11.59□□□□□ -0.55
LSM3-201ENST00000306024 ANKRD62A6NC57 917 aa11.58□□□□□ -0.56
LSM3-201ENST00000306024 SNX3O60493 162 aa11.58□□□□□ -0.56
LSM3-201ENST00000306024 BAG2O95816 211 aa11.58□□□□□ -0.56
LSM3-201ENST00000306024 AGTP01019 485 aa11.58□□□□□ -0.56
LSM3-201ENST00000306024 CALB2P22676 271 aa11.58□□□□□ -0.56
LSM3-201ENST00000306024 STAT5BP51692 787 aa11.58□□□□□ -0.56
LSM3-201ENST00000306024 NPEPPSP55786 919 aa11.58□□□□□ -0.56
LSM3-201ENST00000306024 IFI35P80217 286 aaPredicted RBP11.58□□□□□ -0.56
LSM3-201ENST00000306024 COASYQ13057 564 aa11.58□□□□□ -0.56
LSM3-201ENST00000306024 SLC29A2Q14542 456 aa11.58□□□□□ -0.56
LSM3-201ENST00000306024 LY6KQ17RY6 165 aa11.58□□□□□ -0.56
LSM3-201ENST00000306024 SLC5A9Q2M3M2 681 aa11.58□□□□□ -0.56
LSM3-201ENST00000306024 PLA2G4FQ68DD2 849 aa11.58□□□□□ -0.56
LSM3-201ENST00000306024 GPAT2Q6NUI2 795 aa11.58□□□□□ -0.56
LSM3-201ENST00000306024 CCDC105Q8IYK2 499 aa11.58□□□□□ -0.56
LSM3-201ENST00000306024 SHCBP1Q8NEM2 672 aa11.58□□□□□ -0.56
LSM3-201ENST00000306024 HIC2Q96JB3 615 aa11.58□□□□□ -0.56
LSM3-201ENST00000306024 CENPKQ9BS16 269 aa11.58□□□□□ -0.56
LSM3-201ENST00000306024 MMTAG2Q9BU76 263 aaKnown RBP11.58□□□□□ -0.56
LSM3-201ENST00000306024 SLITRK6Q9H5Y7 841 aa11.58□□□□□ -0.56
LSM3-201ENST00000306024 RNPEPL1Q9HAU8 725 aa11.58□□□□□ -0.56
LSM3-201ENST00000306024 PCDHB13Q9Y5F0 798 aa11.58□□□□□ -0.56
LSM3-201ENST00000306024 PSME4Q14997 1843 aa11.58□□□□□ -0.56
LSM3-201ENST00000306024 IGLV3-22A0A075B6J6 115 aa11.58□□□□□ -0.56
LSM3-201ENST00000306024 LRRIQ4A6NIV6 560 aa11.58□□□□□ -0.56
LSM3-201ENST00000306024 ACSL3O95573 720 aa11.58□□□□□ -0.56
LSM3-201ENST00000306024 MYCP01106 439 aaPredicted RBP11.58□□□□□ -0.56
LSM3-201ENST00000306024 H2AFZP0C0S5 128 aa11.58□□□□□ -0.56
LSM3-201ENST00000306024 GAP43P17677 238 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms