RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 CBWD3Q5JTY5 395 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 CBWD5Q5RIA9 395 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 KAT2BQ92831 832 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 UPF3AQ9H1J1 476 aaKnown RBP18.06■□□□□ 0.48
CPSF4-201ENST00000292476 ANKFY1Q9P2R3 1169 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 DDX20Q9UHI6 824 aaKnown RBP18.06■□□□□ 0.48
CPSF4-201ENST00000292476 DMGDHQ9UI17 866 aaKnown RBP18.06■□□□□ 0.48
CPSF4-201ENST00000292476 USP20Q9Y2K6 914 aa18.06■□□□□ 0.48
CPSF4-201ENST00000292476 MBLAC1A4D2B0 266 aaPredicted RBP18.05■□□□□ 0.48
CPSF4-201ENST00000292476 ADRB2P07550 413 aa18.05■□□□□ 0.48
CPSF4-201ENST00000292476 POU5F1Q01860 360 aaKnown RBP18.05■□□□□ 0.48
CPSF4-201ENST00000292476 APBA1Q02410 837 aa18.05■□□□□ 0.48
CPSF4-201ENST00000292476 MCL1Q07820 350 aa18.05■□□□□ 0.48
CPSF4-201ENST00000292476 MARCH8Q5T0T0 291 aa18.05■□□□□ 0.48
CPSF4-201ENST00000292476 LHX8Q68G74 356 aa18.05■□□□□ 0.48
CPSF4-201ENST00000292476 ZNF571Q7Z3V5 609 aaPredicted RBP18.05■□□□□ 0.48
CPSF4-201ENST00000292476 APBB1IPQ7Z5R6 666 aaPredicted RBP18.05■□□□□ 0.48
CPSF4-201ENST00000292476 LMBR1Q8WVP7 490 aa18.05■□□□□ 0.48
CPSF4-201ENST00000292476 NLRP7Q8WX94 980 aa18.05■□□□□ 0.48
CPSF4-201ENST00000292476 TAF4BQ92750 862 aa18.05■□□□□ 0.48
CPSF4-201ENST00000292476 CCDC127Q96BQ5 260 aa18.05■□□□□ 0.48
CPSF4-201ENST00000292476 SCLT1Q96NL6 688 aa18.05■□□□□ 0.48
CPSF4-201ENST00000292476 MTG1Q9BT17 334 aaPredicted RBP18.05■□□□□ 0.48
CPSF4-201ENST00000292476 INTS2Q9H0H0 1204 aaKnown RBP18.05■□□□□ 0.48
CPSF4-201ENST00000292476 FAM204AQ9H8W3 233 aa18.05■□□□□ 0.48
CPSF4-201ENST00000292476 GDF3Q9NR23 364 aa18.05■□□□□ 0.48
CPSF4-201ENST00000292476 RBM12Q9NTZ6 932 aaKnown RBP18.05■□□□□ 0.48
CPSF4-201ENST00000292476 SETD4Q9NVD3 440 aa18.05■□□□□ 0.48
CPSF4-201ENST00000292476 APEX2Q9UBZ4 518 aa18.05■□□□□ 0.48
CPSF4-201ENST00000292476 NAGPAQ9UK23 515 aa18.05■□□□□ 0.48
CPSF4-201ENST00000292476 TNFSF13BQ9Y275 285 aa18.05■□□□□ 0.48
CPSF4-201ENST00000292476 GOLGA8KD6RF30 607 aa18.04■□□□□ 0.48
CPSF4-201ENST00000292476 OGTO15294 1046 aa18.04■□□□□ 0.48
CPSF4-201ENST00000292476 OPA1O60313 960 aa18.04■□□□□ 0.48
CPSF4-201ENST00000292476 ZMYND10O75800 440 aa18.04■□□□□ 0.48
CPSF4-201ENST00000292476 RPLP2P05387 115 aaKnown RBP18.04■□□□□ 0.48
CPSF4-201ENST00000292476 C6orf222P0C671 652 aaPredicted RBP18.04■□□□□ 0.48
CPSF4-201ENST00000292476 CAPN2P17655 700 aa18.04■□□□□ 0.48
CPSF4-201ENST00000292476 CXCR5P32302 372 aa18.04■□□□□ 0.48
CPSF4-201ENST00000292476 GCLMP48507 274 aa18.04■□□□□ 0.48
CPSF4-201ENST00000292476 TNNC1P63316 161 aa18.04■□□□□ 0.48
CPSF4-201ENST00000292476 DLG4P78352 724 aa18.04■□□□□ 0.48
CPSF4-201ENST00000292476 CLDN10P78369 228 aa18.04■□□□□ 0.48
CPSF4-201ENST00000292476 PURAQ00577 322 aaKnown RBP18.04■□□□□ 0.48
CPSF4-201ENST00000292476 MBTD1Q05BQ5 628 aa18.04■□□□□ 0.48
CPSF4-201ENST00000292476 ATF7IP2Q5U623 682 aa18.04■□□□□ 0.48
CPSF4-201ENST00000292476 MPZL3Q6UWV2 235 aa18.04■□□□□ 0.48
CPSF4-201ENST00000292476 C7orf31Q8N865 590 aa18.04■□□□□ 0.48
CPSF4-201ENST00000292476 SH3GL2Q99962 352 aa18.04■□□□□ 0.48
CPSF4-201ENST00000292476 STK33Q9BYT3 514 aa18.04■□□□□ 0.48
CPSF4-201ENST00000292476 RBAKQ9NYW8 714 aaPredicted RBP18.04■□□□□ 0.48
CPSF4-201ENST00000292476 COQ4Q9Y3A0 265 aa18.04■□□□□ 0.48
CPSF4-201ENST00000292476 A0A087WZ62 844 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 AGPSO00116 658 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 ACTN1P12814 892 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 GGCXP38435 758 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 ARID5AQ03989 594 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 PPP3CAQ08209 521 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 PAK2Q13177 524 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 GNASQ5JWF2 1037 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 ALKBH5Q6P6C2 394 aaKnown RBP18.03■□□□□ 0.48
CPSF4-201ENST00000292476 SND1Q7KZF4 910 aaKnown RBP eCLIP18.03■□□□□ 0.48
CPSF4-201ENST00000292476 KIAA0319LQ8IZA0 1049 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 SYCE1Q8N0S2 351 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 NME8Q8N427 588 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 MREGQ8N565 214 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 LRRC57Q8N9N7 239 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 DIS3LQ8TF46 1054 aaKnown RBP18.03■□□□□ 0.48
CPSF4-201ENST00000292476 CALR3Q96L12 384 aaKnown RBP18.03■□□□□ 0.48
CPSF4-201ENST00000292476 FDXACB1Q9BRP7 624 aaPredicted RBP18.03■□□□□ 0.48
CPSF4-201ENST00000292476 TMEM117Q9H0C3 514 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 IFT122Q9HBG6 1241 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 TMEM59LQ9UK28 342 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 OGDHLQ9ULD0 1010 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 TNRC18O15417 2968 aaPredicted RBP18.03■□□□□ 0.48
CPSF4-201ENST00000292476 C17orf102A2RUQ5 167 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 ZC3H11AO75152 810 aaKnown RBP eCLIP18.03■□□□□ 0.489e-6■■□□□ 13.5
CPSF4-201ENST00000292476 CYP2C9P11712 490 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 PROZP22891 400 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 STAT1P42224 750 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 GPC3P51654 580 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 RPS6KA1Q15418 735 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 EPC2Q52LR7 807 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 C1orf220Q5T0J3 134 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 FBXL13Q8NEE6 735 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 ACTRT1Q8TDG2 376 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 HDAC7Q8WUI4 952 aa18.03■□□□□ 0.48
CPSF4-201ENST00000292476 LENG1Q96BZ8 264 aaPredicted RBP18.03■□□□□ 0.48
CPSF4-201ENST00000292476 GCOM2Q9BZD3 368 aaPredicted RBP18.03■□□□□ 0.48
CPSF4-201ENST00000292476 CNTNAP2Q9UHC6 1331 aa18.02■□□□□ 0.48
CPSF4-201ENST00000292476 ERLIN2O94905 339 aa18.02■□□□□ 0.47
CPSF4-201ENST00000292476 KIF4AO95239 1232 aa18.02■□□□□ 0.47
CPSF4-201ENST00000292476 FTCDO95954 541 aa18.02■□□□□ 0.47
CPSF4-201ENST00000292476 DLATP10515 647 aaKnown RBP18.02■□□□□ 0.47
CPSF4-201ENST00000292476 NLRP11P59045 1033 aaKnown RBP18.02■□□□□ 0.47
CPSF4-201ENST00000292476 BEX3Q00994 111 aa18.02■□□□□ 0.47
CPSF4-201ENST00000292476 SLFN11Q7Z7L1 901 aa18.02■□□□□ 0.47
CPSF4-201ENST00000292476 GSPT2Q8IYD1 628 aaKnown RBP18.02■□□□□ 0.47
CPSF4-201ENST00000292476 USP38Q8NB14 1042 aa18.02■□□□□ 0.47
CPSF4-201ENST00000292476 ZSWIM2Q8NEG5 633 aa18.02■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms