RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 DNERQ8NFT8 737 aa19.6■□□□□ 0.73
SHKBP1-201ENST00000291842 CEP89Q96ST8 783 aa19.6■□□□□ 0.73
SHKBP1-201ENST00000291842 RASSF4Q9H2L5 321 aa19.6■□□□□ 0.73
SHKBP1-201ENST00000291842 PABPC3Q9H361 631 aaKnown RBP19.6■□□□□ 0.73
SHKBP1-201ENST00000291842 SNCAIPQ9Y6H5 919 aa19.6■□□□□ 0.73
SHKBP1-201ENST00000291842 LTBP3Q9NS15 1303 aa19.6■□□□□ 0.73
SHKBP1-201ENST00000291842 FARP2O94887 1054 aaPredicted RBP19.59■□□□□ 0.73
SHKBP1-201ENST00000291842 ICAM3P32942 547 aa19.59■□□□□ 0.73
SHKBP1-201ENST00000291842 CAPSQ13938 189 aa19.59■□□□□ 0.73
SHKBP1-201ENST00000291842 CYP1B1Q16678 543 aa19.59■□□□□ 0.73
SHKBP1-201ENST00000291842 CCDC25Q86WR0 208 aa19.59■□□□□ 0.73
SHKBP1-201ENST00000291842 CHST13Q8NET6 341 aa19.59■□□□□ 0.73
SHKBP1-201ENST00000291842 NLGN2Q8NFZ4 835 aa19.59■□□□□ 0.73
SHKBP1-201ENST00000291842 CHST7Q9NS84 486 aa19.59■□□□□ 0.73
SHKBP1-201ENST00000291842 SLC12A6Q9UHW9 1150 aa19.59■□□□□ 0.73
SHKBP1-201ENST00000291842 NUB1Q9Y5A7 615 aa19.59■□□□□ 0.73
SHKBP1-201ENST00000291842 A0A0B4J269 797 aa19.59■□□□□ 0.73
SHKBP1-201ENST00000291842 MARK3P27448 753 aa19.59■□□□□ 0.73
SHKBP1-201ENST00000291842 NF2P35240 595 aa19.59■□□□□ 0.73
SHKBP1-201ENST00000291842 TNFSF9P41273 254 aa19.59■□□□□ 0.73
SHKBP1-201ENST00000291842 PPP2R2AP63151 447 aa19.59■□□□□ 0.73
SHKBP1-201ENST00000291842 PPP1R7Q15435 360 aa19.59■□□□□ 0.73
SHKBP1-201ENST00000291842 LY6KQ17RY6 165 aa19.59■□□□□ 0.73
SHKBP1-201ENST00000291842 SGO2Q562F6 1265 aa19.59■□□□□ 0.73
SHKBP1-201ENST00000291842 AGBL2Q5U5Z8 902 aa19.59■□□□□ 0.73
SHKBP1-201ENST00000291842 ARFGAP2Q8N6H7 521 aa19.59■□□□□ 0.73
SHKBP1-201ENST00000291842 CCT8L2Q96SF2 557 aa19.59■□□□□ 0.73
SHKBP1-201ENST00000291842 FAM118BQ9BPY3 351 aa19.59■□□□□ 0.73
SHKBP1-201ENST00000291842 PAGR1Q9BTK6 254 aa19.59■□□□□ 0.73
SHKBP1-201ENST00000291842 SOWAHBA6NEL2 793 aa19.58■□□□□ 0.73
SHKBP1-201ENST00000291842 GNA15P30679 374 aa19.58■□□□□ 0.73
SHKBP1-201ENST00000291842 TRIP13Q15645 432 aaPredicted RBP19.58■□□□□ 0.73
SHKBP1-201ENST00000291842 DENND2CQ68D51 928 aa19.58■□□□□ 0.73
SHKBP1-201ENST00000291842 LBX2Q6XYB7 198 aa19.58■□□□□ 0.73
SHKBP1-201ENST00000291842 NLRP14Q86W24 1093 aa19.58■□□□□ 0.73
SHKBP1-201ENST00000291842 ZNF473Q8WTR7 871 aaKnown RBP19.58■□□□□ 0.73
SHKBP1-201ENST00000291842 FAM212AQ96EL1 285 aa19.58■□□□□ 0.73
SHKBP1-201ENST00000291842 ZNF668Q96K58 619 aaPredicted RBP19.58■□□□□ 0.73
SHKBP1-201ENST00000291842 HEMGNQ9BXL5 484 aa19.58■□□□□ 0.73
SHKBP1-201ENST00000291842 ECEL1O95672 775 aa19.58■□□□□ 0.72
SHKBP1-201ENST00000291842 CYP1A1P04798 512 aaPredicted RBP19.58■□□□□ 0.72
SHKBP1-201ENST00000291842 GJC1P36383 396 aa19.58■□□□□ 0.72
SHKBP1-201ENST00000291842 STAT5BP51692 787 aa19.58■□□□□ 0.72
SHKBP1-201ENST00000291842 NOL9Q5SY16 702 aaKnown RBP19.58■□□□□ 0.72
SHKBP1-201ENST00000291842 SLFN12LQ6IEE8 588 aa19.58■□□□□ 0.72
SHKBP1-201ENST00000291842 GADL1Q6ZQY3 521 aa19.58■□□□□ 0.72
SHKBP1-201ENST00000291842 MON1BQ7L1V2 547 aa19.58■□□□□ 0.72
SHKBP1-201ENST00000291842 MYCBPAPQ8TBZ2 947 aa19.58■□□□□ 0.72
SHKBP1-201ENST00000291842 MDM1Q8TC05 714 aa19.58■□□□□ 0.72
SHKBP1-201ENST00000291842 NIFKQ9BYG3 293 aaKnown RBP19.58■□□□□ 0.72
SHKBP1-201ENST00000291842 PASKQ96RG2 1323 aa19.57■□□□□ 0.72
SHKBP1-201ENST00000291842 CNTNAP2Q9UHC6 1331 aa19.57■□□□□ 0.72
SHKBP1-201ENST00000291842 FSCN2O14926 492 aa19.57■□□□□ 0.72
SHKBP1-201ENST00000291842 TCF7P36402 384 aaPredicted RBP19.57■□□□□ 0.72
SHKBP1-201ENST00000291842 NOP14P78316 857 aaKnown RBP19.57■□□□□ 0.72
SHKBP1-201ENST00000291842 CENPCQ03188 943 aa19.57■□□□□ 0.72
SHKBP1-201ENST00000291842 TRIM50Q86XT4 487 aa19.57■□□□□ 0.72
SHKBP1-201ENST00000291842 RBBP8NLQ8NC74 664 aaPredicted RBP19.57■□□□□ 0.72
SHKBP1-201ENST00000291842 PRPF31Q8WWY3 499 aaKnown RBP19.57■□□□□ 0.72
SHKBP1-201ENST00000291842 TCHPQ9BT92 498 aa19.57■□□□□ 0.72
SHKBP1-201ENST00000291842 MTRF1LQ9UGC7 380 aaKnown RBP19.57■□□□□ 0.72
SHKBP1-201ENST00000291842 USTQ9Y2C2 406 aa19.57■□□□□ 0.72
SHKBP1-201ENST00000291842 IGKV6D-21A0A0A0MT36 114 aa19.57■□□□□ 0.72
SHKBP1-201ENST00000291842 THAP12O43422 761 aa19.57■□□□□ 0.72
SHKBP1-201ENST00000291842 CST3P01034 146 aaPredicted RBP19.57■□□□□ 0.72
SHKBP1-201ENST00000291842 SRGAP2CP0DJJ0 459 aa19.57■□□□□ 0.72
SHKBP1-201ENST00000291842 SSR1P43307 286 aaKnown RBP19.57■□□□□ 0.72
SHKBP1-201ENST00000291842 BPIFB4P59827 614 aa19.57■□□□□ 0.72
SHKBP1-201ENST00000291842 KRT17Q04695 432 aa19.57■□□□□ 0.72
SHKBP1-201ENST00000291842 R3HDM1Q15032 1099 aaKnown RBP19.57■□□□□ 0.72
SHKBP1-201ENST00000291842 SH3D19Q5HYK7 790 aa19.57■□□□□ 0.72
SHKBP1-201ENST00000291842 MMS22LQ6ZRQ5 1243 aa19.57■□□□□ 0.72
SHKBP1-201ENST00000291842 CCDC50Q8IVM0 306 aa19.57■□□□□ 0.72
SHKBP1-201ENST00000291842 ADAM22Q9P0K1 906 aa19.57■□□□□ 0.72
SHKBP1-201ENST00000291842 ADGRA2Q96PE1 1338 aa19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 PIGRP01833 764 aa19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 CLTAP09496 248 aa19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 ABCD1P33897 745 aa19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 SLCO1A2P46721 670 aa19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 EIF3BP55884 814 aaKnown RBP19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 ENPEPQ07075 957 aa19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 NCOA4Q13772 614 aa19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 ZNF677Q86XU0 584 aa19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 EFCAB13Q8IY85 973 aa19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 FAM81BQ96LP2 452 aa19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 CGRRF1Q99675 332 aa19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 LRRC19Q9H756 370 aa19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 AVENQ9NQS1 362 aaPredicted RBP19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 NRBP2Q9NSY0 501 aa19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 KCNG1Q9UIX4 513 aa19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 R3HDM2Q9Y2K5 976 aaKnown RBP19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 LDHAP00338 332 aaKnown RBP19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 PGK2P07205 417 aa19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 FNTAP49354 379 aa19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 NOMO3P69849 1222 aa19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 TARBP2Q15633 366 aaKnown RBP19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 ZNF394Q53GI3 561 aa19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 ABRAQ8N0Z2 381 aa19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 LRRC71Q8N4P6 559 aa19.56■□□□□ 0.72
SHKBP1-201ENST00000291842 ART4Q93070 314 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms