RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 FAM182AQ5T1J6 154 aa13.46□□□□□ -0.25
LIG1-201ENST00000263274 SPATA21Q7Z572 469 aa13.46□□□□□ -0.25
LIG1-201ENST00000263274 NLRX1Q86UT6 975 aa13.46□□□□□ -0.25
LIG1-201ENST00000263274 IWS1Q96ST2 819 aa13.46□□□□□ -0.25
LIG1-201ENST00000263274 ADAM22Q9P0K1 906 aa13.46□□□□□ -0.25
LIG1-201ENST00000263274 UVRAGQ9P2Y5 699 aa13.46□□□□□ -0.25
LIG1-201ENST00000263274 EXOC1LA0A1B0GW35 172 aa13.46□□□□□ -0.26
LIG1-201ENST00000263274 ADSSP30520 456 aa13.46□□□□□ -0.26
LIG1-201ENST00000263274 LIG4P49917 911 aa13.46□□□□□ -0.26
LIG1-201ENST00000263274 RPS6P62753 249 aaKnown RBP13.46□□□□□ -0.26
LIG1-201ENST00000263274 MTERF2Q49AM1 385 aa13.46□□□□□ -0.26
LIG1-201ENST00000263274 BRDTQ58F21 947 aaPredicted RBP13.46□□□□□ -0.26
LIG1-201ENST00000263274 ZNF449Q6P9G9 518 aa13.46□□□□□ -0.26
LIG1-201ENST00000263274 TRMT10CQ7L0Y3 403 aaKnown RBP13.46□□□□□ -0.26
LIG1-201ENST00000263274 USP37Q86T82 979 aa13.46□□□□□ -0.26
LIG1-201ENST00000263274 SHC3Q92529 594 aa13.46□□□□□ -0.26
LIG1-201ENST00000263274 HERPUD2Q9BSE4 406 aa13.46□□□□□ -0.26
LIG1-201ENST00000263274 TCHPQ9BT92 498 aa13.46□□□□□ -0.26
LIG1-201ENST00000263274 NAALADL1Q9UQQ1 740 aa13.46□□□□□ -0.26
LIG1-201ENST00000263274 TTC4O95801 387 aa13.45□□□□□ -0.26
LIG1-201ENST00000263274 ZSCAN5DPP0CG00 497 aa13.45□□□□□ -0.26
LIG1-201ENST00000263274 ITIH2P19823 946 aa13.45□□□□□ -0.26
LIG1-201ENST00000263274 GCKP35557 465 aa13.45□□□□□ -0.26
LIG1-201ENST00000263274 XRCC4Q13426 336 aa13.45□□□□□ -0.26
LIG1-201ENST00000263274 ZNF70Q9UC06 446 aaPredicted RBP13.45□□□□□ -0.26
LIG1-201ENST00000263274 HERC5Q9UII4 1024 aaKnown RBP13.45□□□□□ -0.26
LIG1-201ENST00000263274 A0A1B0GUA9 196 aa13.45□□□□□ -0.26
LIG1-201ENST00000263274 DNAJC3Q13217 504 aa13.45□□□□□ -0.26
LIG1-201ENST00000263274 P3H1Q32P28 736 aa13.45□□□□□ -0.26
LIG1-201ENST00000263274 PREPLQ4J6C6 727 aaPredicted RBP13.45□□□□□ -0.26
LIG1-201ENST00000263274 SWSAP1Q6NVH7 229 aa13.45□□□□□ -0.26
LIG1-201ENST00000263274 ATL2Q8NHH9 583 aa13.45□□□□□ -0.26
LIG1-201ENST00000263274 GRK7Q8WTQ7 553 aa13.45□□□□□ -0.26
LIG1-201ENST00000263274 P3H4Q92791 437 aa13.45□□□□□ -0.26
LIG1-201ENST00000263274 RSRC1Q96IZ7 334 aaKnown RBP13.45□□□□□ -0.26
LIG1-201ENST00000263274 RBM15Q96T37 977 aaKnown RBP eCLIP13.45□□□□□ -0.268e-6■□□□□ 8.4
LIG1-201ENST00000263274 TMEM8AQ9HCN3 771 aa13.45□□□□□ -0.26
LIG1-201ENST00000263274 ETS1P14921 441 aa13.45□□□□□ -0.26
LIG1-201ENST00000263274 SPP2Q13103 211 aa13.45□□□□□ -0.26
LIG1-201ENST00000263274 NFIL3Q16649 462 aa13.45□□□□□ -0.26
LIG1-201ENST00000263274 LACTB2Q53H82 288 aaPredicted RBP13.45□□□□□ -0.26
LIG1-201ENST00000263274 LIN9Q5TKA1 542 aa13.45□□□□□ -0.26
LIG1-201ENST00000263274 PIGWQ7Z7B1 504 aa13.45□□□□□ -0.26
LIG1-201ENST00000263274 FAM160B2Q86V87 743 aa13.45□□□□□ -0.26
LIG1-201ENST00000263274 NSMCE1Q8WV22 266 aa13.45□□□□□ -0.26
LIG1-201ENST00000263274 ETNK1Q9HBU6 452 aa13.45□□□□□ -0.26
LIG1-201ENST00000263274 NINJ2Q9NZG7 142 aa13.45□□□□□ -0.26
LIG1-201ENST00000263274 NRAPQ86VF7 1730 aa13.44□□□□□ -0.26
LIG1-201ENST00000263274 LRRIQ4A6NIV6 560 aa13.44□□□□□ -0.26
LIG1-201ENST00000263274 BHMG1C9JSJ3 638 aaPredicted RBP13.44□□□□□ -0.26
LIG1-201ENST00000263274 DIAPH2O60879 1101 aa13.44□□□□□ -0.26
LIG1-201ENST00000263274 ALDH5A1P51649 535 aaPredicted RBP13.44□□□□□ -0.26
LIG1-201ENST00000263274 PSMC5P62195 406 aa13.44□□□□□ -0.26
LIG1-201ENST00000263274 MPP2Q14168 576 aa13.44□□□□□ -0.26
LIG1-201ENST00000263274 ITIH4Q14624 930 aa13.44□□□□□ -0.26
LIG1-201ENST00000263274 DCUN1D2Q6PH85 259 aa13.44□□□□□ -0.26
LIG1-201ENST00000263274 HELQQ8TDG4 1101 aa13.44□□□□□ -0.26
LIG1-201ENST00000263274 VTI1AQ96AJ9 217 aa13.44□□□□□ -0.26
LIG1-201ENST00000263274 RANBP17Q9H2T7 1088 aaKnown RBP13.44□□□□□ -0.26
LIG1-201ENST00000263274 AGO4Q9HCK5 861 aaKnown RBP13.44□□□□□ -0.26
LIG1-201ENST00000263274 ADAMTSL1Q8N6G6 1762 aa13.44□□□□□ -0.26
LIG1-201ENST00000263274 TLR3O15455 904 aaKnown RBP13.44□□□□□ -0.26
LIG1-201ENST00000263274 P4HA2O15460 535 aa13.44□□□□□ -0.26
LIG1-201ENST00000263274 DNAJC8O75937 253 aaPredicted RBP13.44□□□□□ -0.26
LIG1-201ENST00000263274 CYP1A2P05177 515 aa13.44□□□□□ -0.26
LIG1-201ENST00000263274 CFHP08603 1231 aa13.44□□□□□ -0.26
LIG1-201ENST00000263274 GHRP10912 638 aa13.44□□□□□ -0.26
LIG1-201ENST00000263274 NQO1P15559 274 aaKnown RBP13.44□□□□□ -0.26
LIG1-201ENST00000263274 MRPS9P82933 396 aaKnown RBP13.44□□□□□ -0.26
LIG1-201ENST00000263274 LACTBP83111 547 aaPredicted RBP13.44□□□□□ -0.26
LIG1-201ENST00000263274 ALCAMQ13740 583 aa13.44□□□□□ -0.26
LIG1-201ENST00000263274 SLC27A3Q5K4L6 730 aa13.44□□□□□ -0.26
LIG1-201ENST00000263274 SYCP2LQ5T4T6 812 aa13.44□□□□□ -0.26
LIG1-201ENST00000263274 ARHGEF18Q6ZSZ5 1173 aa13.44□□□□□ -0.26
LIG1-201ENST00000263274 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.44□□□□□ -0.26
LIG1-201ENST00000263274 MORC4Q8TE76 937 aa13.44□□□□□ -0.26
LIG1-201ENST00000263274 AGAP11Q8TF27 550 aa13.44□□□□□ -0.26
LIG1-201ENST00000263274 OSBPL8Q9BZF1 889 aa13.44□□□□□ -0.26
LIG1-201ENST00000263274 ROPN1BQ9BZX4 212 aaPredicted RBP13.44□□□□□ -0.26
LIG1-201ENST00000263274 KIF9Q9HAQ2 790 aa13.44□□□□□ -0.26
LIG1-201ENST00000263274 ROPN1Q9HAT0 212 aaPredicted RBP13.44□□□□□ -0.26
LIG1-201ENST00000263274 STK32BQ9NY57 414 aa13.44□□□□□ -0.26
LIG1-201ENST00000263274 FEM1BQ9UK73 627 aa13.44□□□□□ -0.26
LIG1-201ENST00000263274 KLRG2A4D1S0 409 aaPredicted RBP13.43□□□□□ -0.26
LIG1-201ENST00000263274 ANP32DO95626 131 aa13.43□□□□□ -0.26
LIG1-201ENST00000263274 PSMC4P43686 418 aa13.43□□□□□ -0.26
LIG1-201ENST00000263274 CLEC16AQ2KHT3 1053 aa13.43□□□□□ -0.26
LIG1-201ENST00000263274 ANKMY2Q8IV38 441 aa13.43□□□□□ -0.26
LIG1-201ENST00000263274 MCOLN2Q8IZK6 566 aa13.43□□□□□ -0.26
LIG1-201ENST00000263274 SLC17A8Q8NDX2 589 aa13.43□□□□□ -0.26
LIG1-201ENST00000263274 SPIRE2Q8WWL2 714 aa13.43□□□□□ -0.26
LIG1-201ENST00000263274 SPOCK2Q92563 424 aa13.43□□□□□ -0.26
LIG1-201ENST00000263274 IFT74Q96LB3 600 aa13.43□□□□□ -0.26
LIG1-201ENST00000263274 SERPINB12Q96P63 405 aa13.43□□□□□ -0.26
LIG1-201ENST00000263274 TRAIPQ9BWF2 469 aa13.43□□□□□ -0.26
LIG1-201ENST00000263274 DCLK3Q9C098 648 aa13.43□□□□□ -0.26
LIG1-201ENST00000263274 C10orf88Q9H8K7 445 aa13.43□□□□□ -0.26
LIG1-201ENST00000263274 ALG13Q9NP73 1137 aaKnown RBP13.43□□□□□ -0.26
LIG1-201ENST00000263274 AAASQ9NRG9 546 aa13.43□□□□□ -0.26
LIG1-201ENST00000263274 ZNF277Q9NRM2 450 aaPredicted RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms