RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 HLTFQ14527 1009 aaKnown RBP eCLIP13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 SURF1Q15526 300 aa13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 SEL1L2Q5TEA6 688 aa13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 TRIM72Q6ZMU5 477 aa13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 PNMA8AQ86V59 439 aaPredicted RBP13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 MREGQ8N565 214 aa13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 OR5B17Q8NGF7 314 aa13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 APOBEC3GQ9HC16 384 aaKnown RBP13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 PDGFCQ9NRA1 345 aa13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 PCDHB4Q9Y5E5 795 aa13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 FAM189A1O60320 539 aa13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 FAM153BP0C7A2 387 aa13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 POTEJP0CG39 1038 aa13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 CETPP11597 493 aa13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 ACO1P21399 889 aaKnown RBP13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 TNFSF9P41273 254 aa13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 NSFP46459 744 aaKnown RBP13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 GUCY2FP51841 1108 aa13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 MCL1Q07820 350 aa13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 FAM153CQ494X1 144 aa13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 NAA35Q5VZE5 725 aa13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 EFCAB12Q6NXP0 572 aa13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 MCOLN2Q8IZK6 566 aa13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 TSEN2Q8NCE0 465 aaKnown RBP13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 KRT35Q92764 455 aa13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 CD101Q93033 1021 aa13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 ERAP1Q9NZ08 941 aa13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 FAM153AQ9UHL3 310 aa13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 UTP11Q9Y3A2 253 aaKnown RBP13.84□□□□□ -0.19
SPTLC1-201ENST00000262554 BHMG1C9JSJ3 638 aaPredicted RBP13.83□□□□□ -0.2
SPTLC1-201ENST00000262554 ASAP2O43150 1006 aa13.83□□□□□ -0.2
SPTLC1-201ENST00000262554 CALCAP01258 141 aa13.83□□□□□ -0.2
SPTLC1-201ENST00000262554 CTNNA2P26232 953 aa13.83□□□□□ -0.2
SPTLC1-201ENST00000262554 CTNNA1P35221 906 aaKnown RBP13.83□□□□□ -0.2
SPTLC1-201ENST00000262554 PEX5P50542 639 aa13.83□□□□□ -0.2
SPTLC1-201ENST00000262554 LAMC2Q13753 1193 aa13.83□□□□□ -0.2
SPTLC1-201ENST00000262554 TRADDQ15628 312 aa13.83□□□□□ -0.2
SPTLC1-201ENST00000262554 TMEM132AQ24JP5 1023 aa13.83□□□□□ -0.2
SPTLC1-201ENST00000262554 PPP1R2P3Q6NXS1 205 aa13.83□□□□□ -0.2
SPTLC1-201ENST00000262554 TMEM270Q6UE05 265 aa13.83□□□□□ -0.2
SPTLC1-201ENST00000262554 TSHZ1Q6ZSZ6 1077 aa13.83□□□□□ -0.2
SPTLC1-201ENST00000262554 TRAPPC12Q8WVT3 735 aa13.83□□□□□ -0.2
SPTLC1-201ENST00000262554 NLRP4Q96MN2 994 aa13.83□□□□□ -0.2
SPTLC1-201ENST00000262554 TSPYL2Q9H2G4 693 aaPredicted RBP13.83□□□□□ -0.2
SPTLC1-201ENST00000262554 FAM204AQ9H8W3 233 aa13.83□□□□□ -0.2
SPTLC1-201ENST00000262554 AVENQ9NQS1 362 aaPredicted RBP13.83□□□□□ -0.2
SPTLC1-201ENST00000262554 CNTN6Q9UQ52 1028 aa13.83□□□□□ -0.2
SPTLC1-201ENST00000262554 SLC45A1Q9Y2W3 748 aa13.83□□□□□ -0.2
SPTLC1-201ENST00000262554 NUB1Q9Y5A7 615 aa13.83□□□□□ -0.2
SPTLC1-201ENST00000262554 EVPLQ92817 2033 aa13.83□□□□□ -0.2
SPTLC1-201ENST00000262554 GOLGA8KD6RF30 607 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 PDHXO00330 501 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 ACKR2O00590 384 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 TTI1O43156 1089 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 CYP1A1P04798 512 aaPredicted RBP13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 GNA15P30679 374 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 MAPK4P31152 587 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 MARCKSL1P49006 195 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 CENPCQ03188 943 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 DUOXA2Q1HG44 320 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 ZNF792Q3KQV3 632 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 ZNF484Q5JVG2 852 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 CFAP58Q5T655 872 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 MPZL3Q6UWV2 235 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 ADAT2Q7Z6V5 191 aaKnown RBP13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 RBBP8NLQ8NC74 664 aaPredicted RBP13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 CPA5Q8WXQ8 436 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 RIN2Q8WYP3 895 aaPredicted RBP13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 BTBD6Q96KE9 485 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 RAB17Q9H0T7 212 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 ZNF408Q9H9D4 720 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 VTA1Q9NP79 307 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 FAM114A2Q9NRY5 505 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 CPSF3Q9UKF6 684 aaKnown RBP13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 PCDHA3Q9Y5H8 950 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 INO80B-WBP1J3KQ70 363 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 ABLIM1O14639 778 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 GH1P01241 217 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 ADORA2AP29274 412 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 LMAN1P49257 510 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 GTF2A2P52657 109 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 DR1Q01658 176 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 POU5F1Q01860 360 aaKnown RBP13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 ARHGAP1Q07960 439 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 DHX34Q14147 1143 aaKnown RBP13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 TMEM63BQ5T3F8 832 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 LIN9Q5TKA1 542 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 ATF7IP2Q5U623 682 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 CHRDL2Q6WN34 429 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 ABRAQ8N0Z2 381 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 SH3GL2Q99962 352 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 PLVAPQ9BX97 442 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 INO80BQ9C086 356 aaPredicted RBP13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 FZD8Q9H461 694 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 ANAPC7Q9UJX3 599 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 NR2E1Q9Y466 385 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 IVNS1ABPQ9Y6Y0 642 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 ZSWIM8A7E2V4 1837 aa13.82□□□□□ -0.2
SPTLC1-201ENST00000262554 FAM187AA6NFU0 413 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms