RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 SRRM1Q8IYB3 904 aaKnown RBP10.72□□□□□ -0.69
LIG3-201ENST00000262327 POMGNT1Q8WZA1 660 aa10.72□□□□□ -0.69
LIG3-201ENST00000262327 L3MBTL3Q96JM7 780 aaPredicted RBP10.72□□□□□ -0.69
LIG3-201ENST00000262327 RPS6KC1Q96S38 1066 aa10.72□□□□□ -0.69
LIG3-201ENST00000262327 MRPL11Q9Y3B7 192 aaKnown RBP10.72□□□□□ -0.69
LIG3-201ENST00000262327 TELO2Q9Y4R8 837 aa10.72□□□□□ -0.69
LIG3-201ENST00000262327 ATP9AO75110 1047 aa10.72□□□□□ -0.69
LIG3-201ENST00000262327 ASNSP08243 561 aa10.72□□□□□ -0.69
LIG3-201ENST00000262327 PLS3P13797 630 aa10.72□□□□□ -0.69
LIG3-201ENST00000262327 RRM1P23921 792 aa10.72□□□□□ -0.69
LIG3-201ENST00000262327 YWHABP31946 246 aaKnown RBP10.72□□□□□ -0.69
LIG3-201ENST00000262327 PDE6CP51160 858 aa10.72□□□□□ -0.69
LIG3-201ENST00000262327 SLMAPQ14BN4 828 aa10.72□□□□□ -0.69
LIG3-201ENST00000262327 ZFYVE27Q5T4F4 411 aa10.72□□□□□ -0.69
LIG3-201ENST00000262327 VSTM1Q6UX27 236 aa10.72□□□□□ -0.69
LIG3-201ENST00000262327 SLC9A9Q8IVB4 645 aa10.72□□□□□ -0.69
LIG3-201ENST00000262327 TRIM6Q9C030 488 aaPredicted RBP10.72□□□□□ -0.69
LIG3-201ENST00000262327 ATP8B3O60423 1300 aa10.72□□□□□ -0.69
LIG3-201ENST00000262327 ASTN2O75129 1339 aaPredicted RBP10.72□□□□□ -0.69
LIG3-201ENST00000262327 EIF4E1BA6NMX2 242 aaKnown RBP10.71□□□□□ -0.69
LIG3-201ENST00000262327 ASAP2O43150 1006 aa10.71□□□□□ -0.69
LIG3-201ENST00000262327 THAP12O43422 761 aa10.71□□□□□ -0.69
LIG3-201ENST00000262327 SNX3O60493 162 aa10.71□□□□□ -0.69
LIG3-201ENST00000262327 PIAS1O75925 651 aa10.71□□□□□ -0.69
LIG3-201ENST00000262327 P4HBP07237 508 aaKnown RBP10.71□□□□□ -0.69
LIG3-201ENST00000262327 BRAFP15056 766 aa10.71□□□□□ -0.69
LIG3-201ENST00000262327 MTM1Q13496 603 aa10.71□□□□□ -0.69
LIG3-201ENST00000262327 SPOPLQ6IQ16 392 aa10.71□□□□□ -0.69
LIG3-201ENST00000262327 ZNF513Q8N8E2 541 aaPredicted RBP10.71□□□□□ -0.69
LIG3-201ENST00000262327 TMEM206Q9H813 350 aa10.71□□□□□ -0.69
LIG3-201ENST00000262327 ECT2Q9H8V3 914 aa10.71□□□□□ -0.69
LIG3-201ENST00000262327 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.71□□□□□ -0.69
LIG3-201ENST00000262327 IRAK4Q9NWZ3 460 aa10.71□□□□□ -0.69
LIG3-201ENST00000262327 PARP2Q9UGN5 583 aa10.71□□□□□ -0.69
LIG3-201ENST00000262327 TMX2Q9Y320 296 aa10.71□□□□□ -0.69
LIG3-201ENST00000262327 SPAG7O75391 227 aa10.71□□□□□ -0.69
LIG3-201ENST00000262327 DNAJC8O75937 253 aaPredicted RBP10.71□□□□□ -0.69
LIG3-201ENST00000262327 HIRAP54198 1017 aaPredicted RBP10.71□□□□□ -0.69
LIG3-201ENST00000262327 MFAP3P55082 362 aa10.71□□□□□ -0.69
LIG3-201ENST00000262327 MYO1EQ12965 1108 aa10.71□□□□□ -0.69
LIG3-201ENST00000262327 TAOK1Q7L7X3 1001 aa10.71□□□□□ -0.69
LIG3-201ENST00000262327 HELQQ8TDG4 1101 aa10.71□□□□□ -0.69
LIG3-201ENST00000262327 PSPC1Q8WXF1 523 aaKnown RBP10.71□□□□□ -0.69
LIG3-201ENST00000262327 ZNF341Q9BYN7 854 aa10.71□□□□□ -0.69
LIG3-201ENST00000262327 UBE4BO95155 1302 aa10.71□□□□□ -0.7
LIG3-201ENST00000262327 GSTTP1A0A1W2PQM5 241 aa10.71□□□□□ -0.7
LIG3-201ENST00000262327 IGF2BP3O00425 579 aaKnown RBP eCLIP10.71□□□□□ -0.7
LIG3-201ENST00000262327 DHX15O43143 795 aaKnown RBP10.71□□□□□ -0.7
LIG3-201ENST00000262327 MGRN1O60291 552 aa10.71□□□□□ -0.7
LIG3-201ENST00000262327 HSPA6P17066 643 aa10.71□□□□□ -0.7
LIG3-201ENST00000262327 CD58P19256 250 aa10.71□□□□□ -0.7
LIG3-201ENST00000262327 CNGA1P29973 690 aa10.71□□□□□ -0.7
LIG3-201ENST00000262327 MRPS9P82933 396 aaKnown RBP10.71□□□□□ -0.7
LIG3-201ENST00000262327 KAZNQ674X7 775 aa10.71□□□□□ -0.7
LIG3-201ENST00000262327 B3GNT9Q6UX72 402 aa10.71□□□□□ -0.7
LIG3-201ENST00000262327 TAB3Q8N5C8 712 aaPredicted RBP10.71□□□□□ -0.7
LIG3-201ENST00000262327 SHC3Q92529 594 aa10.71□□□□□ -0.7
LIG3-201ENST00000262327 RMDN2Q96LZ7 410 aa10.71□□□□□ -0.7
LIG3-201ENST00000262327 RAVER2Q9HCJ3 691 aaKnown RBP10.71□□□□□ -0.7
LIG3-201ENST00000262327 ETAA1Q9NY74 926 aa10.71□□□□□ -0.7
LIG3-201ENST00000262327 TCEAL9Q9UHQ7 104 aa10.71□□□□□ -0.7
LIG3-201ENST00000262327 ZNF112Q9UJU3 913 aa10.71□□□□□ -0.7
LIG3-201ENST00000262327 SLC12A4Q9UP95 1085 aa10.71□□□□□ -0.7
LIG3-201ENST00000262327 DENND3A2RUS2 1198 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 EME2A4GXA9 379 aaPredicted RBP10.7□□□□□ -0.7
LIG3-201ENST00000262327 PI4K2BG5E9Z4 385 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 CYP1A2P05177 515 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 RALAP11233 206 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 EZRP15311 586 aaKnown RBP10.7□□□□□ -0.7
LIG3-201ENST00000262327 QARSP47897 775 aaKnown RBP10.7□□□□□ -0.7
LIG3-201ENST00000262327 HADHBP55084 474 aaKnown RBP10.7□□□□□ -0.7
LIG3-201ENST00000262327 CDR2Q01850 454 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 ATP13A4Q4VNC1 1196 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 AP1ARQ63HQ0 302 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 SV2AQ7L0J3 742 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 ANKS1BQ7Z6G8 1248 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 PARD3BQ8TEW8 1205 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 CHURC1Q8WUH1 139 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 BSNDQ8WZ55 320 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 SPOCK2Q92563 424 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 ACSF2Q96CM8 615 aaPredicted RBP10.7□□□□□ -0.7
LIG3-201ENST00000262327 NT5C1BQ96P26 610 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 RANBP17Q9H2T7 1088 aaKnown RBP10.7□□□□□ -0.7
LIG3-201ENST00000262327 GGA3Q9NZ52 723 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 ANAPC5Q9UJX4 755 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 GTF3C4Q9UKN8 822 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 TESPA1A2RU30 521 aaPredicted RBP10.7□□□□□ -0.7
LIG3-201ENST00000262327 GHRP10912 638 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 GZMAP12544 262 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 ALDH5A1P51649 535 aaPredicted RBP10.7□□□□□ -0.7
LIG3-201ENST00000262327 NCALDP61601 193 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 CYP1B1Q16678 543 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 TKFCQ3LXA3 575 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 SUPT20HL1Q3ZLR7 823 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 SPDYCQ5MJ68 293 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 KRT39Q6A163 491 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 SCARA3Q6AZY7 606 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 ZNF483Q8TF39 744 aaPredicted RBP10.7□□□□□ -0.7
LIG3-201ENST00000262327 HAUS1Q96CS2 278 aa10.7□□□□□ -0.7
LIG3-201ENST00000262327 TAAR1Q96RJ0 339 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms