RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 KRT1P04264 644 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 SLC10A3P09131 477 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 TMEM253P0C7T8 217 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 MYL6P60660 151 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 ARHGAP1Q07960 439 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 MAPK7Q13164 816 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 BFSP2Q13515 415 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 RSRC2Q7L4I2 434 aaKnown RBP12.35□□□□□ -0.43
VPS4A-201ENST00000254950 MORC4Q8TE76 937 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 GRK7Q8WTQ7 553 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 ACO2Q99798 780 aaKnown RBP12.35□□□□□ -0.43
VPS4A-201ENST00000254950 IKZF4Q9H2S9 585 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 UVRAGQ9P2Y5 699 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 TRIM10Q9UDY6 481 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 TRPV2Q9Y5S1 764 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 KIAA1551Q9HCM1 1747 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 A6NJR5 290 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 POLR3GO15318 223 aaPredicted RBP12.35□□□□□ -0.43
VPS4A-201ENST00000254950 GJB1P08034 283 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 EDNRBP24530 442 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 TAF6P49848 677 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 ARPP19P56211 112 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 KAZNQ674X7 775 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 CEP128Q6ZU80 1094 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 SLC30A5Q8TAD4 765 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 DHX38Q92620 1227 aaKnown RBP12.35□□□□□ -0.43
VPS4A-201ENST00000254950 KRT12Q99456 494 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 NCAPGQ9BPX3 1015 aa12.35□□□□□ -0.43
VPS4A-201ENST00000254950 NTPCRQ9BSD7 190 aaKnown RBP12.35□□□□□ -0.43
VPS4A-201ENST00000254950 NGRNQ9NPE2 291 aaKnown RBP12.35□□□□□ -0.43
VPS4A-201ENST00000254950 SYNJ2BP-COX16A0A087WUM0 186 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 STK10O94804 968 aaKnown RBP12.34□□□□□ -0.43
VPS4A-201ENST00000254950 IFNB1P01574 187 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 TFRCP02786 760 aaKnown RBP12.34□□□□□ -0.43
VPS4A-201ENST00000254950 HMGCRP04035 888 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 APBA1Q02410 837 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 FSTL1Q12841 308 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 PCBP1Q15365 356 aaKnown RBP eCLIP12.34□□□□□ -0.43
VPS4A-201ENST00000254950 LRRC15Q8TF66 581 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 UBE2Q2Q8WVN8 375 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 PLEKHA4Q9H4M7 779 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 FAM204AQ9H8W3 233 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 COX16Q9P0S2 106 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 ABL1P00519 1130 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 ELNP15502 786 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 SSTR3P32745 418 aaPredicted RBP12.34□□□□□ -0.43
VPS4A-201ENST00000254950 CDR2Q01850 454 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 GCNT1Q02742 428 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 KRT222Q8N1A0 295 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 MED15Q96RN5 788 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 CDT1Q9H211 546 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 HDAC6Q9UBN7 1215 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 LRRD1A4D1F6 860 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 TRAPPC3O43617 180 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 PRPSAP2O60256 369 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 DLG4P78352 724 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 MEA1Q16626 185 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 NYAP1Q6ZVC0 841 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 NPLOC4Q8TAT6 608 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 CD99L2Q8TCZ2 262 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 PPP1R13LQ8WUF5 828 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 TATDN2Q93075 761 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 C18orf8Q96DM3 657 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 RUNDC3BQ96NL0 473 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 OSBPL9Q96SU4 736 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 PARVAQ9NVD7 372 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 SNTG2Q9NY99 539 aa12.34□□□□□ -0.43
VPS4A-201ENST00000254950 DCDC2CA8MYV0 355 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 ADORA2BP29275 332 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 ATICP31939 592 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 PBX1P40424 430 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 KCNMA1Q12791 1236 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 MAPK8IP2Q13387 824 aaPredicted RBP12.33□□□□□ -0.44
VPS4A-201ENST00000254950 LLGL1Q15334 1064 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 NT5DC4Q86YG4 428 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 CCDC89Q8N998 374 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 CPA5Q8WXQ8 436 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 WDR35Q9P2L0 1181 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 IKBKGQ9Y6K9 419 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 IGF2BP3O00425 579 aaKnown RBP eCLIP12.33□□□□□ -0.44
VPS4A-201ENST00000254950 RRP9O43818 475 aaKnown RBP12.33□□□□□ -0.44
VPS4A-201ENST00000254950 SRGAP2O75044 1071 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 ZRANB2O95218 330 aaKnown RBP eCLIP12.33□□□□□ -0.44
VPS4A-201ENST00000254950 SGPL1O95470 568 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 CYP11B1P15538 503 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 MAN1A1P33908 653 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 TAP1Q03518 808 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 PTGISQ16647 500 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 EPC2Q52LR7 807 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 SPOPLQ6IQ16 392 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 LEKR1Q6ZMV7 388 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 ZNF571Q7Z3V5 609 aaPredicted RBP12.33□□□□□ -0.44
VPS4A-201ENST00000254950 CCDC117Q8IWD4 279 aaPredicted RBP12.33□□□□□ -0.44
VPS4A-201ENST00000254950 KIAA0319LQ8IZA0 1049 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 HSD3B7Q9H2F3 369 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 IP6K2Q9UHH9 426 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 ZNF148Q9UQR1 794 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 TLL2Q9Y6L7 1015 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 A0A0B4J269 797 aa12.33□□□□□ -0.44
VPS4A-201ENST00000254950 SMIM35A0A1B0GVV1 85 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms