RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 ARHGEF35A5YM69 484 aa21.37■■□□□ 1.01
CLN3-262ENST00000637699 JAK2O60674 1132 aa21.37■■□□□ 1.01
CLN3-262ENST00000637699 POU2F2P09086 479 aa21.37■■□□□ 1.01
CLN3-262ENST00000637699 CYP11B2P19099 503 aa21.37■■□□□ 1.01
CLN3-262ENST00000637699 NAMPTP43490 491 aa21.37■■□□□ 1.01
CLN3-262ENST00000637699 CLCNKBP51801 687 aa21.37■■□□□ 1.01
CLN3-262ENST00000637699 ZNF528Q3MIS6 628 aa21.37■■□□□ 1.01
CLN3-262ENST00000637699 NSUN7Q8NE18 718 aaKnown RBP21.37■■□□□ 1.01
CLN3-262ENST00000637699 GTF3C6Q969F1 213 aa21.37■■□□□ 1.01
CLN3-262ENST00000637699 POLR3CQ9BUI4 534 aaPredicted RBP21.37■■□□□ 1.01
CLN3-262ENST00000637699 KIFC3Q9BVG8 833 aa21.37■■□□□ 1.01
CLN3-262ENST00000637699 OSBPL6Q9BZF3 934 aa21.37■■□□□ 1.01
CLN3-262ENST00000637699 NOTCH4Q99466 2003 aa21.37■■□□□ 1.01
CLN3-262ENST00000637699 TMEM189-UBE2V1I3L0A0 370 aa21.36■■□□□ 1.01
CLN3-262ENST00000637699 I3L4J1 428 aa21.36■■□□□ 1.01
CLN3-262ENST00000637699 TKTP29401 623 aaKnown RBP21.36■■□□□ 1.01
CLN3-262ENST00000637699 DCAF4L1Q3SXM0 396 aa21.36■■□□□ 1.01
CLN3-262ENST00000637699 ZBTB41Q5SVQ8 909 aa21.36■■□□□ 1.01
CLN3-262ENST00000637699 TPRG1Q6ZUI0 275 aa21.36■■□□□ 1.01
CLN3-262ENST00000637699 PPP1R10Q96QC0 940 aaKnown RBP21.36■■□□□ 1.01
CLN3-262ENST00000637699 PLA2G2FQ9BZM2 168 aa21.36■■□□□ 1.01
CLN3-262ENST00000637699 GOLGA2P5Q9HBQ8 144 aa21.36■■□□□ 1.01
CLN3-262ENST00000637699 NCDNQ9UBB6 729 aa21.36■■□□□ 1.01
CLN3-262ENST00000637699 NEFLP07196 543 aa21.35■■□□□ 1.01
CLN3-262ENST00000637699 BRCC3P46736 316 aa21.35■■□□□ 1.01
CLN3-262ENST00000637699 RBM25P49756 843 aaKnown RBP21.35■■□□□ 1.01
CLN3-262ENST00000637699 PPP2R5AQ15172 486 aa21.35■■□□□ 1.01
CLN3-262ENST00000637699 SLC5A9Q2M3M2 681 aa21.35■■□□□ 1.01
CLN3-262ENST00000637699 NT5DC1Q5TFE4 455 aa21.35■■□□□ 1.01
CLN3-262ENST00000637699 ATF7IP2Q5U623 682 aa21.35■■□□□ 1.01
CLN3-262ENST00000637699 CD300LGQ6UXG3 332 aa21.35■■□□□ 1.01
CLN3-262ENST00000637699 ANKS3Q6ZW76 656 aa21.35■■□□□ 1.01
CLN3-262ENST00000637699 ERMNQ8TAM6 284 aa21.35■■□□□ 1.01
CLN3-262ENST00000637699 ATRIPQ8WXE1 791 aa21.35■■□□□ 1.01
CLN3-262ENST00000637699 DDX27Q96GQ7 796 aaKnown RBP21.35■■□□□ 1.01
CLN3-262ENST00000637699 DLL3Q9NYJ7 618 aa21.35■■□□□ 1.01
CLN3-262ENST00000637699 BACE2Q9Y5Z0 518 aa21.35■■□□□ 1.01
CLN3-262ENST00000637699 NCOR2Q9Y618 2525 aa21.34■■□□□ 1.01
CLN3-262ENST00000637699 TRAPPC3O43617 180 aa21.34■■□□□ 1.01
CLN3-262ENST00000637699 RHOP08100 348 aa21.34■■□□□ 1.01
CLN3-262ENST00000637699 TARSP26639 723 aaKnown RBP21.34■■□□□ 1.01
CLN3-262ENST00000637699 RPA1P27694 616 aa21.34■■□□□ 1.01
CLN3-262ENST00000637699 GUCY1B3Q02153 619 aa21.34■■□□□ 1.01
CLN3-262ENST00000637699 UPP1Q16831 310 aa21.34■■□□□ 1.01
CLN3-262ENST00000637699 RSPO4Q2I0M5 234 aaPredicted RBP21.34■■□□□ 1.01
CLN3-262ENST00000637699 VARS2Q5ST30 1063 aaKnown RBP21.34■■□□□ 1.01
CLN3-262ENST00000637699 RTL10Q7L3V2 364 aa21.34■■□□□ 1.01
CLN3-262ENST00000637699 C3orf58Q8NDZ4 430 aa21.34■■□□□ 1.01
CLN3-262ENST00000637699 IFT74Q96LB3 600 aa21.34■■□□□ 1.01
CLN3-262ENST00000637699 HEBP1Q9NRV9 189 aa21.34■■□□□ 1.01
CLN3-262ENST00000637699 SPTLC1O15269 473 aa21.33■■□□□ 1.01
CLN3-262ENST00000637699 ECI2O75521 394 aa21.33■■□□□ 1.01
CLN3-262ENST00000637699 MAGEA9P43362 315 aa21.33■■□□□ 1.01
CLN3-262ENST00000637699 EFNA5P52803 228 aa21.33■■□□□ 1.01
CLN3-262ENST00000637699 ANAPC15P60006 121 aa21.33■■□□□ 1.01
CLN3-262ENST00000637699 ZNF174Q15697 407 aa21.33■■□□□ 1.01
CLN3-262ENST00000637699 TANGO2Q6ICL3 276 aa21.33■■□□□ 1.01
CLN3-262ENST00000637699 POTEHQ6S545 545 aa21.33■■□□□ 1.01
CLN3-262ENST00000637699 TSSK4Q6SA08 328 aa21.33■■□□□ 1.01
CLN3-262ENST00000637699 UROC1Q96N76 676 aa21.33■■□□□ 1.01
CLN3-262ENST00000637699 NELL2Q99435 816 aa21.33■■□□□ 1.01
CLN3-262ENST00000637699 GDE1Q9NZC3 331 aa21.33■■□□□ 1.01
CLN3-262ENST00000637699 PCDHGA2Q9Y5H1 932 aa21.33■■□□□ 1.01
CLN3-262ENST00000637699 TRIP11Q15643 1979 aa21.33■■□□□ 1.01
CLN3-262ENST00000637699 PATJQ8NI35 1801 aa21.33■■□□□ 1.01
CLN3-262ENST00000637699 SMIM28A0A1B0GU29 152 aa21.32■■□□□ 1
CLN3-262ENST00000637699 PRRG1O14668 218 aa21.32■■□□□ 1
CLN3-262ENST00000637699 NCAM2O15394 837 aa21.32■■□□□ 1
CLN3-262ENST00000637699 LRG1P02750 347 aa21.32■■□□□ 1
CLN3-262ENST00000637699 CEBPBP17676 345 aa21.32■■□□□ 1
CLN3-262ENST00000637699 PTPN2P17706 415 aa21.32■■□□□ 1
CLN3-262ENST00000637699 ELF1P32519 619 aa21.32■■□□□ 1
CLN3-262ENST00000637699 ARPP19P56211 112 aa21.32■■□□□ 1
CLN3-262ENST00000637699 ROR1Q01973 937 aa21.32■■□□□ 1
CLN3-262ENST00000637699 ZNF852Q6ZMS4 543 aa21.32■■□□□ 1
CLN3-262ENST00000637699 CEP120Q8N960 986 aa21.32■■□□□ 1
CLN3-262ENST00000637699 CLDN23Q96B33 292 aa21.32■■□□□ 1
CLN3-262ENST00000637699 BORCS6Q96GS4 357 aa21.32■■□□□ 1
CLN3-262ENST00000637699 ZSCAN32Q9NX65 697 aa21.32■■□□□ 1
CLN3-262ENST00000637699 K7ERI5 159 aa21.31■■□□□ 1
CLN3-262ENST00000637699 OR52Z1P0C646 297 aa21.31■■□□□ 1
CLN3-262ENST00000637699 OSTNP61366 133 aa21.31■■□□□ 1
CLN3-262ENST00000637699 SOX4Q06945 474 aaPredicted RBP21.31■■□□□ 1
CLN3-262ENST00000637699 SAFBQ15424 915 aaKnown RBP eCLIP21.31■■□□□ 1
CLN3-262ENST00000637699 APBB1IPQ7Z5R6 666 aaPredicted RBP21.31■■□□□ 1
CLN3-262ENST00000637699 ZBTB44Q8NCP5 570 aa21.31■■□□□ 1
CLN3-262ENST00000637699 ZNF461Q8TAF7 563 aa21.31■■□□□ 1
CLN3-262ENST00000637699 CORO1BQ9BR76 489 aa21.31■■□□□ 1
CLN3-262ENST00000637699 MRPS17Q9Y2R5 130 aaKnown RBP21.31■■□□□ 1
CLN3-262ENST00000637699 ARHGEF37A1IGU5 675 aa21.3■■□□□ 1
CLN3-262ENST00000637699 YARSP54577 528 aaKnown RBP21.3■■□□□ 1
CLN3-262ENST00000637699 GRM2Q14416 872 aa21.3■■□□□ 1
CLN3-262ENST00000637699 ECM1Q16610 540 aa21.3■■□□□ 1
CLN3-262ENST00000637699 SLC8B1Q6J4K2 584 aa21.3■■□□□ 1
CLN3-262ENST00000637699 KIFAP3Q92845 792 aa21.3■■□□□ 1
CLN3-262ENST00000637699 ELSPBP1Q96BH3 223 aa21.3■■□□□ 1
CLN3-262ENST00000637699 TCEAL4Q96EI5 215 aa21.3■■□□□ 1
CLN3-262ENST00000637699 BHMT2Q9H2M3 363 aa21.3■■□□□ 1
CLN3-262ENST00000637699 CYP4F11Q9HBI6 524 aa21.3■■□□□ 1
CLN3-262ENST00000637699 AVENQ9NQS1 362 aaPredicted RBP21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms