RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 CLCNKBP51801 687 aa21.02■□□□□ 0.96
CLN3-260ENST00000637578 KRT85P78386 507 aa21.02■□□□□ 0.96
CLN3-260ENST00000637578 CREMQ03060 361 aa21.02■□□□□ 0.96
CLN3-260ENST00000637578 RARS2Q5T160 578 aaKnown RBP21.02■□□□□ 0.96
CLN3-260ENST00000637578 LILRA6Q6PI73 481 aa21.02■□□□□ 0.96
CLN3-260ENST00000637578 SV2BQ7L1I2 683 aa21.02■□□□□ 0.96
CLN3-260ENST00000637578 HDAC7Q8WUI4 952 aa21.02■□□□□ 0.96
CLN3-260ENST00000637578 RIN2Q8WYP3 895 aaPredicted RBP21.02■□□□□ 0.96
CLN3-260ENST00000637578 PIK3R5Q8WYR1 880 aa21.02■□□□□ 0.96
CLN3-260ENST00000637578 DDX12PQ92771 950 aa21.02■□□□□ 0.96
CLN3-260ENST00000637578 DDX27Q96GQ7 796 aaKnown RBP21.02■□□□□ 0.96
CLN3-260ENST00000637578 RPGRIP1Q96KN7 1286 aa21.02■□□□□ 0.96
CLN3-260ENST00000637578 TTPALQ9BTX7 342 aa21.02■□□□□ 0.96
CLN3-260ENST00000637578 POMKQ9H5K3 350 aa21.02■□□□□ 0.96
CLN3-260ENST00000637578 TRIP11Q15643 1979 aa21.02■□□□□ 0.96
CLN3-260ENST00000637578 FAM189A1O60320 539 aa21.02■□□□□ 0.95
CLN3-260ENST00000637578 NMT1P30419 496 aaKnown RBP21.02■□□□□ 0.95
CLN3-260ENST00000637578 ATAT1Q5SQI0 421 aa21.02■□□□□ 0.95
CLN3-260ENST00000637578 FAM171A1Q5VUB5 890 aa21.02■□□□□ 0.95
CLN3-260ENST00000637578 GPR149Q86SP6 731 aa21.02■□□□□ 0.95
CLN3-260ENST00000637578 MAP4K3Q8IVH8 894 aa21.02■□□□□ 0.95
CLN3-260ENST00000637578 CMASQ8NFW8 434 aaPredicted RBP21.02■□□□□ 0.95
CLN3-260ENST00000637578 LNX1Q8TBB1 728 aaPredicted RBP21.02■□□□□ 0.95
CLN3-260ENST00000637578 FEZF2Q8TBJ5 459 aa21.02■□□□□ 0.95
CLN3-260ENST00000637578 RIPOR3Q96MK2 946 aa21.02■□□□□ 0.95
CLN3-260ENST00000637578 STRA6Q9BX79 667 aa21.02■□□□□ 0.95
CLN3-260ENST00000637578 PLEKHA5Q9HAU0 1116 aa21.02■□□□□ 0.95
CLN3-260ENST00000637578 GOLGA2P5Q9HBQ8 144 aa21.02■□□□□ 0.95
CLN3-260ENST00000637578 B3GAT3O94766 335 aa21.01■□□□□ 0.95
CLN3-260ENST00000637578 GLUD1P00367 558 aa21.01■□□□□ 0.95
CLN3-260ENST00000637578 CLTAP09496 248 aa21.01■□□□□ 0.95
CLN3-260ENST00000637578 HARSP12081 509 aaKnown RBP21.01■□□□□ 0.95
CLN3-260ENST00000637578 LIG4P49917 911 aa21.01■□□□□ 0.95
CLN3-260ENST00000637578 SEZ6Q53EL9 994 aa21.01■□□□□ 0.95
CLN3-260ENST00000637578 SLC39A4Q6P5W5 647 aa21.01■□□□□ 0.95
CLN3-260ENST00000637578 DYMQ7RTS9 669 aa21.01■□□□□ 0.95
CLN3-260ENST00000637578 ZNF720Q7Z2F6 126 aa21.01■□□□□ 0.95
CLN3-260ENST00000637578 C3orf58Q8NDZ4 430 aa21.01■□□□□ 0.95
CLN3-260ENST00000637578 BICD1Q96G01 975 aa21.01■□□□□ 0.95
CLN3-260ENST00000637578 RHOBTB2Q9BYZ6 727 aa21.01■□□□□ 0.95
CLN3-260ENST00000637578 ZHX3Q9H4I2 956 aa21.01■□□□□ 0.95
CLN3-260ENST00000637578 SEL1LQ9UBV2 794 aa21.01■□□□□ 0.95
CLN3-260ENST00000637578 DPP7Q9UHL4 492 aa21.01■□□□□ 0.95
CLN3-260ENST00000637578 A0A0B4J269 797 aa21■□□□□ 0.95
CLN3-260ENST00000637578 TTC26A0AVF1 554 aa21■□□□□ 0.95
CLN3-260ENST00000637578 HNRNPDLO14979 420 aaKnown RBP21■□□□□ 0.95
CLN3-260ENST00000637578 ADRB2P07550 413 aa21■□□□□ 0.95
CLN3-260ENST00000637578 FGFR3P22607 806 aa21■□□□□ 0.95
CLN3-260ENST00000637578 KYAT1Q16773 422 aa21■□□□□ 0.95
CLN3-260ENST00000637578 TMEM31Q5JXX7 168 aa21■□□□□ 0.95
CLN3-260ENST00000637578 PRSS55Q6UWB4 352 aaPredicted RBP21■□□□□ 0.95
CLN3-260ENST00000637578 TMC5Q6UXY8 1006 aa21■□□□□ 0.95
CLN3-260ENST00000637578 PDZRN4Q6ZMN7 1036 aaPredicted RBP21■□□□□ 0.95
CLN3-260ENST00000637578 C15orf39Q6ZRI6 1047 aa21■□□□□ 0.95
CLN3-260ENST00000637578 KCNG4Q8TDN1 519 aa21■□□□□ 0.95
CLN3-260ENST00000637578 CLSTN3Q9BQT9 956 aa21■□□□□ 0.95
CLN3-260ENST00000637578 LRFN3Q9BTN0 628 aa21■□□□□ 0.95
CLN3-260ENST00000637578 PANK2Q9BZ23 570 aa21■□□□□ 0.95
CLN3-260ENST00000637578 MAN1C1Q9NR34 630 aa21■□□□□ 0.95
CLN3-260ENST00000637578 MUTYHQ9UIF7 546 aa21■□□□□ 0.95
CLN3-260ENST00000637578 TGM5O43548 720 aa20.99■□□□□ 0.95
CLN3-260ENST00000637578 PPP1R37O75864 691 aa20.99■□□□□ 0.95
CLN3-260ENST00000637578 WEE2P0C1S8 567 aa20.99■□□□□ 0.95
CLN3-260ENST00000637578 RPL17P18621 184 aaKnown RBP20.99■□□□□ 0.95
CLN3-260ENST00000637578 RPL9P32969 192 aaKnown RBP20.99■□□□□ 0.95
CLN3-260ENST00000637578 STAT6P42226 847 aa20.99■□□□□ 0.95
CLN3-260ENST00000637578 ZC2HC1CQ53FD0 456 aaPredicted RBP20.99■□□□□ 0.95
CLN3-260ENST00000637578 AXDND1Q5T1B0 1012 aaPredicted RBP20.99■□□□□ 0.95
CLN3-260ENST00000637578 PDXDC1Q6P996 788 aa20.99■□□□□ 0.95
CLN3-260ENST00000637578 SFR1Q86XK3 245 aa20.99■□□□□ 0.95
CLN3-260ENST00000637578 PLEKHA4Q9H4M7 779 aa20.99■□□□□ 0.95
CLN3-260ENST00000637578 RCOR1Q9UKL0 485 aa20.99■□□□□ 0.95
CLN3-260ENST00000637578 STYXL1Q9Y6J8 313 aa20.99■□□□□ 0.95
CLN3-260ENST00000637578 FRMD3A2A2Y4 597 aa20.98■□□□□ 0.95
CLN3-260ENST00000637578 OGTO15294 1046 aa20.98■□□□□ 0.95
CLN3-260ENST00000637578 CUTAO60888 179 aa20.98■□□□□ 0.95
CLN3-260ENST00000637578 ZBTB6Q15916 424 aa20.98■□□□□ 0.95
CLN3-260ENST00000637578 E2F4Q16254 413 aa20.98■□□□□ 0.95
CLN3-260ENST00000637578 CYP26C1Q6V0L0 522 aa20.98■□□□□ 0.95
CLN3-260ENST00000637578 CEP57Q86XR8 500 aa20.98■□□□□ 0.95
CLN3-260ENST00000637578 PALB2Q86YC2 1186 aa20.98■□□□□ 0.95
CLN3-260ENST00000637578 LEO1Q8WVC0 666 aaPredicted RBP20.98■□□□□ 0.95
CLN3-260ENST00000637578 C18orf25Q96B23 403 aaPredicted RBP20.98■□□□□ 0.95
CLN3-260ENST00000637578 HVCN1Q96D96 273 aa20.98■□□□□ 0.95
CLN3-260ENST00000637578 NR2E1Q9Y466 385 aa20.98■□□□□ 0.95
CLN3-260ENST00000637578 PODXLO00592 558 aa20.97■□□□□ 0.95
CLN3-260ENST00000637578 TRAPPC3O43617 180 aa20.97■□□□□ 0.95
CLN3-260ENST00000637578 CXCL8P10145 99 aa20.97■□□□□ 0.95
CLN3-260ENST00000637578 GAP43P17677 238 aa20.97■□□□□ 0.95
CLN3-260ENST00000637578 TNFSF9P41273 254 aa20.97■□□□□ 0.95
CLN3-260ENST00000637578 PSMD5Q16401 504 aa20.97■□□□□ 0.95
CLN3-260ENST00000637578 ELMSAN1Q6PJG2 1045 aa20.97■□□□□ 0.95
CLN3-260ENST00000637578 SHC4Q6S5L8 630 aa20.97■□□□□ 0.95
CLN3-260ENST00000637578 SPATA32Q96LK8 384 aa20.97■□□□□ 0.95
CLN3-260ENST00000637578 OLFML3Q9NRN5 406 aa20.97■□□□□ 0.95
CLN3-260ENST00000637578 USTQ9Y2C2 406 aa20.97■□□□□ 0.95
CLN3-260ENST00000637578 CITO14578 2027 aa20.97■□□□□ 0.95
CLN3-260ENST00000637578 MATR3P43243 847 aaKnown RBP eCLIP20.97■□□□□ 0.95
CLN3-260ENST00000637578 ME1P48163 572 aa20.97■□□□□ 0.95
CLN3-260ENST00000637578 ENOX2Q16206 610 aaKnown RBP20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms