RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 PDXDC1Q6P996 788 aa16.17■□□□□ 0.18
CLN3-249ENST00000636685 CACNA2D4Q7Z3S7 1137 aa16.17■□□□□ 0.18
CLN3-249ENST00000636685 GAB3Q8WWW8 586 aa16.17■□□□□ 0.18
CLN3-249ENST00000636685 TCEANC2Q96MN5 208 aa16.17■□□□□ 0.18
CLN3-249ENST00000636685 SCNM1Q9BWG6 230 aa16.17■□□□□ 0.18
CLN3-249ENST00000636685 CDY1Q9Y6F8 540 aa16.17■□□□□ 0.18
CLN3-249ENST00000636685 ADAMTS20P59510 1910 aa16.17■□□□□ 0.18
CLN3-249ENST00000636685 LAMA5O15230 3695 aa16.16■□□□□ 0.18
CLN3-249ENST00000636685 INO80B-WBP1J3KQ70 363 aa16.16■□□□□ 0.18
CLN3-249ENST00000636685 ARNTLO00327 626 aa16.16■□□□□ 0.18
CLN3-249ENST00000636685 RPP40O75818 363 aaKnown RBP16.16■□□□□ 0.18
CLN3-249ENST00000636685 ARF4P18085 180 aaPredicted RBP16.16■□□□□ 0.18
CLN3-249ENST00000636685 IGFBP6P24592 240 aaPredicted RBP16.16■□□□□ 0.18
CLN3-249ENST00000636685 GNA11P29992 359 aa16.16■□□□□ 0.18
CLN3-249ENST00000636685 HOXA6P31267 233 aa16.16■□□□□ 0.18
CLN3-249ENST00000636685 MPLP40238 635 aa16.16■□□□□ 0.18
CLN3-249ENST00000636685 USP11P51784 963 aa16.16■□□□□ 0.18
CLN3-249ENST00000636685 PTENP60484 403 aa16.16■□□□□ 0.18
CLN3-249ENST00000636685 NCBP1Q09161 790 aaKnown RBP16.16■□□□□ 0.18
CLN3-249ENST00000636685 AMHR2Q16671 573 aa16.16■□□□□ 0.18
CLN3-249ENST00000636685 DIEXFQ68CQ4 756 aaKnown RBP16.16■□□□□ 0.18
CLN3-249ENST00000636685 RTL10Q7L3V2 364 aa16.16■□□□□ 0.18
CLN3-249ENST00000636685 CCDC12Q8WUD4 166 aaPredicted RBP16.16■□□□□ 0.18
CLN3-249ENST00000636685 SMARCD2Q92925 531 aa16.16■□□□□ 0.18
CLN3-249ENST00000636685 WRAP73Q9P2S5 460 aaPredicted RBP16.16■□□□□ 0.18
CLN3-249ENST00000636685 MTRRQ9UBK8 725 aa16.16■□□□□ 0.18
CLN3-249ENST00000636685 ITPR1Q14643 2758 aa16.16■□□□□ 0.18
CLN3-249ENST00000636685 KIF26AQ9ULI4 1882 aaPredicted RBP16.16■□□□□ 0.18
CLN3-249ENST00000636685 SLC38A8A6NNN8 435 aa16.15■□□□□ 0.18
CLN3-249ENST00000636685 C4orf47A7E2U8 309 aa16.15■□□□□ 0.18
CLN3-249ENST00000636685 EML1O00423 815 aa16.15■□□□□ 0.18
CLN3-249ENST00000636685 ASAP2O43150 1006 aa16.15■□□□□ 0.18
CLN3-249ENST00000636685 B4GALT5O43286 388 aa16.15■□□□□ 0.18
CLN3-249ENST00000636685 LRG1P02750 347 aa16.15■□□□□ 0.18
CLN3-249ENST00000636685 FGFR3P22607 806 aa16.15■□□□□ 0.18
CLN3-249ENST00000636685 ADD1P35611 737 aaKnown RBP16.15■□□□□ 0.18
CLN3-249ENST00000636685 RFC5P40937 340 aa16.15■□□□□ 0.18
CLN3-249ENST00000636685 MBTD1Q05BQ5 628 aa16.15■□□□□ 0.18
CLN3-249ENST00000636685 ELAVL2Q12926 359 aaKnown RBP16.15■□□□□ 0.18
CLN3-249ENST00000636685 EMC2Q15006 297 aa16.15■□□□□ 0.18
CLN3-249ENST00000636685 Q4G0T1 1027 aa16.15■□□□□ 0.18
CLN3-249ENST00000636685 SH3PXD2AQ5TCZ1 1133 aa16.15■□□□□ 0.18
CLN3-249ENST00000636685 CREB3L3Q68CJ9 461 aa16.15■□□□□ 0.18
CLN3-249ENST00000636685 TXNDC11Q6PKC3 985 aa16.15■□□□□ 0.18
CLN3-249ENST00000636685 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.15■□□□□ 0.18
CLN3-249ENST00000636685 DEPDC1BQ8WUY9 529 aa16.15■□□□□ 0.18
CLN3-249ENST00000636685 TCP11Q8WWU5 503 aa16.15■□□□□ 0.18
CLN3-249ENST00000636685 EDEM2Q9BV94 578 aa16.15■□□□□ 0.18
CLN3-249ENST00000636685 CXCL16Q9H2A7 254 aa16.15■□□□□ 0.18
CLN3-249ENST00000636685 VPS45Q9NRW7 570 aa16.15■□□□□ 0.18
CLN3-249ENST00000636685 PCDHGA5Q9Y5G8 931 aa16.15■□□□□ 0.18
CLN3-249ENST00000636685 TRIP11Q15643 1979 aa16.15■□□□□ 0.18
CLN3-249ENST00000636685 ZMYM2Q9UBW7 1377 aa16.14■□□□□ 0.17
CLN3-249ENST00000636685 ARHGEF37A1IGU5 675 aa16.14■□□□□ 0.17
CLN3-249ENST00000636685 EXTL3O43909 919 aa16.14■□□□□ 0.17
CLN3-249ENST00000636685 TDP2O95551 362 aa16.14■□□□□ 0.17
CLN3-249ENST00000636685 QARSP47897 775 aaKnown RBP16.14■□□□□ 0.17
CLN3-249ENST00000636685 KPNA1P52294 538 aaPredicted RBP16.14■□□□□ 0.17
CLN3-249ENST00000636685 PCBP1Q15365 356 aaKnown RBP eCLIP16.14■□□□□ 0.17
CLN3-249ENST00000636685 DGKKQ5KSL6 1271 aa16.14■□□□□ 0.17
CLN3-249ENST00000636685 MFSD6LQ8IWD5 586 aa16.14■□□□□ 0.17
CLN3-249ENST00000636685 EXOC8Q8IYI6 725 aa16.14■□□□□ 0.17
CLN3-249ENST00000636685 CSGALNACT1Q8TDX6 532 aa16.14■□□□□ 0.17
CLN3-249ENST00000636685 LSG1Q9H089 658 aaKnown RBP16.14■□□□□ 0.17
CLN3-249ENST00000636685 NUP205Q92621 2012 aa16.14■□□□□ 0.17
CLN3-249ENST00000636685 ASCC3Q8N3C0 2202 aaKnown RBP16.13■□□□□ 0.17
CLN3-249ENST00000636685 KLF18A0A0U1RQI7 1052 aa16.13■□□□□ 0.17
CLN3-249ENST00000636685 HEPACAM2A8MVW5 462 aa16.13■□□□□ 0.17
CLN3-249ENST00000636685 PTGESO14684 152 aa16.13■□□□□ 0.17
CLN3-249ENST00000636685 ZNF197O14709 1029 aa16.13■□□□□ 0.17
CLN3-249ENST00000636685 MOSPD3O75425 235 aa16.13■□□□□ 0.17
CLN3-249ENST00000636685 CCDC192P0DO97 292 aa16.13■□□□□ 0.17
CLN3-249ENST00000636685 GJA1P17302 382 aa16.13■□□□□ 0.17
CLN3-249ENST00000636685 RBM25P49756 843 aaKnown RBP16.13■□□□□ 0.17
CLN3-249ENST00000636685 MLLT6P55198 1093 aaPredicted RBP16.13■□□□□ 0.17
CLN3-249ENST00000636685 SPIRE1Q08AE8 756 aa16.13■□□□□ 0.17
CLN3-249ENST00000636685 NAB2Q15742 525 aa16.13■□□□□ 0.17
CLN3-249ENST00000636685 SOWAHCQ53LP3 525 aaPredicted RBP16.13■□□□□ 0.17
CLN3-249ENST00000636685 SLC27A1Q6PCB7 646 aa16.13■□□□□ 0.17
CLN3-249ENST00000636685 PDZD4Q76G19 769 aaPredicted RBP16.13■□□□□ 0.17
CLN3-249ENST00000636685 HS6ST3Q8IZP7 471 aa16.13■□□□□ 0.17
CLN3-249ENST00000636685 TTC8Q8TAM2 541 aa16.13■□□□□ 0.17
CLN3-249ENST00000636685 ETNPPLQ8TBG4 499 aa16.13■□□□□ 0.17
CLN3-249ENST00000636685 BICD2Q8TD16 824 aa16.13■□□□□ 0.17
CLN3-249ENST00000636685 TBCKQ8TEA7 893 aa16.13■□□□□ 0.17
CLN3-249ENST00000636685 RSPRY1Q96DX4 576 aa16.13■□□□□ 0.17
CLN3-249ENST00000636685 NAP1L2Q9ULW6 460 aaPredicted RBP16.13■□□□□ 0.17
CLN3-249ENST00000636685 LOC400499M0QZD8 3231 aa16.13■□□□□ 0.17
CLN3-249ENST00000636685 IGSF10Q6WRI0 2623 aa16.12■□□□□ 0.17
CLN3-249ENST00000636685 PRRG1O14668 218 aa16.12■□□□□ 0.17
CLN3-249ENST00000636685 MICAL2O94851 1124 aa16.12■□□□□ 0.17
CLN3-249ENST00000636685 TKTP29401 623 aaKnown RBP16.12■□□□□ 0.17
CLN3-249ENST00000636685 PON2Q15165 354 aa16.12■□□□□ 0.17
CLN3-249ENST00000636685 KIAA1211LQ6NV74 962 aa16.12■□□□□ 0.17
CLN3-249ENST00000636685 PKN3Q6P5Z2 889 aa16.12■□□□□ 0.17
CLN3-249ENST00000636685 IFNLR1Q8IU57 520 aaPredicted RBP16.12■□□□□ 0.17
CLN3-249ENST00000636685 ZSCAN18Q8TBC5 510 aaPredicted RBP16.12■□□□□ 0.17
CLN3-249ENST00000636685 ASAP3Q8TDY4 903 aa16.12■□□□□ 0.17
CLN3-249ENST00000636685 DDX27Q96GQ7 796 aaKnown RBP16.12■□□□□ 0.17
CLN3-249ENST00000636685 MSANTD3Q96H12 275 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms