RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 DCLRE1AQ6PJP8 1040 aa22.54■■□□□ 1.2
CLN3-240ENST00000631023 FMR1NBQ8N0W7 255 aaPredicted RBP22.54■■□□□ 1.2
CLN3-240ENST00000631023 GLIS3Q8NEA6 775 aa22.54■■□□□ 1.2
CLN3-240ENST00000631023 RABGGTAQ92696 567 aa22.54■■□□□ 1.2
CLN3-240ENST00000631023 PAAF1Q9BRP4 392 aa22.54■■□□□ 1.2
CLN3-240ENST00000631023 VN1R3Q9BXE9 311 aa22.54■■□□□ 1.2
CLN3-240ENST00000631023 UBE2ZQ9H832 354 aaPredicted RBP22.54■■□□□ 1.2
CLN3-240ENST00000631023 MRPL17Q9NRX2 175 aaKnown RBP22.54■■□□□ 1.2
CLN3-240ENST00000631023 CLDND1Q9NY35 253 aa22.54■■□□□ 1.2
CLN3-240ENST00000631023 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP22.53■■□□□ 1.2
CLN3-240ENST00000631023 HIDE1A8MVS5 230 aa22.53■■□□□ 1.2
CLN3-240ENST00000631023 LACTBL1A8MY62 500 aa22.53■■□□□ 1.2
CLN3-240ENST00000631023 KIAA0391O15091 583 aaKnown RBP22.53■■□□□ 1.2
CLN3-240ENST00000631023 XPOTO43592 962 aaKnown RBP22.53■■□□□ 1.2
CLN3-240ENST00000631023 URODP06132 367 aa22.53■■□□□ 1.2
CLN3-240ENST00000631023 RPL9P32969 192 aaKnown RBP22.53■■□□□ 1.2
CLN3-240ENST00000631023 MRPS5P82675 430 aaKnown RBP22.53■■□□□ 1.2
CLN3-240ENST00000631023 COL19A1Q14993 1142 aa22.53■■□□□ 1.2
CLN3-240ENST00000631023 ZBTB41Q5SVQ8 909 aa22.53■■□□□ 1.2
CLN3-240ENST00000631023 KIAA1841Q6NSI8 718 aa22.53■■□□□ 1.2
CLN3-240ENST00000631023 EFHBQ8N7U6 833 aa22.53■■□□□ 1.2
CLN3-240ENST00000631023 FAM212AQ96EL1 285 aa22.53■■□□□ 1.2
CLN3-240ENST00000631023 HERC2P3Q9BVR0 1158 aa22.53■■□□□ 1.2
CLN3-240ENST00000631023 CACNG4Q9UBN1 327 aa22.53■■□□□ 1.2
CLN3-240ENST00000631023 SF3B1O75533 1304 aaKnown RBP eCLIP22.53■■□□□ 1.23e-9■■■■■ 164.7
CLN3-240ENST00000631023 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP22.52■■□□□ 1.2
CLN3-240ENST00000631023 F8W810 466 aa22.52■■□□□ 1.2
CLN3-240ENST00000631023 PER2O15055 1255 aa22.52■■□□□ 1.2
CLN3-240ENST00000631023 MEFVO15553 781 aaPredicted RBP22.52■■□□□ 1.2
CLN3-240ENST00000631023 B3GAT3O94766 335 aa22.52■■□□□ 1.2
CLN3-240ENST00000631023 RPN1P04843 607 aaKnown RBP22.52■■□□□ 1.2
CLN3-240ENST00000631023 ADRB2P07550 413 aa22.52■■□□□ 1.2
CLN3-240ENST00000631023 GTF2F1P35269 517 aaKnown RBP eCLIP22.52■■□□□ 1.2
CLN3-240ENST00000631023 CLCNKBP51801 687 aa22.52■■□□□ 1.2
CLN3-240ENST00000631023 SNRPFP62306 86 aaKnown RBP22.52■■□□□ 1.2
CLN3-240ENST00000631023 ELAVL2Q12926 359 aaKnown RBP22.52■■□□□ 1.2
CLN3-240ENST00000631023 DUSP6Q16828 381 aa22.52■■□□□ 1.2
CLN3-240ENST00000631023 UPP1Q16831 310 aa22.52■■□□□ 1.2
CLN3-240ENST00000631023 ARMCX5Q6P1M9 558 aa22.52■■□□□ 1.2
CLN3-240ENST00000631023 SCFD1Q8WVM8 642 aa22.52■■□□□ 1.2
CLN3-240ENST00000631023 KIF12Q96FN5 646 aa22.52■■□□□ 1.2
CLN3-240ENST00000631023 HOOK1Q9UJC3 728 aaKnown RBP22.52■■□□□ 1.2
CLN3-240ENST00000631023 TMEM189-UBE2V1I3L0A0 370 aa22.51■■□□□ 1.19
CLN3-240ENST00000631023 KIF4AO95239 1232 aa22.51■■□□□ 1.19
CLN3-240ENST00000631023 EFEMP2O95967 443 aa22.51■■□□□ 1.19
CLN3-240ENST00000631023 DPYDQ12882 1025 aa22.51■■□□□ 1.19
CLN3-240ENST00000631023 ADAM15Q13444 863 aa22.51■■□□□ 1.19
CLN3-240ENST00000631023 SNW1Q13573 536 aaKnown RBP22.51■■□□□ 1.19
CLN3-240ENST00000631023 CTC1Q2NKJ3 1217 aa22.51■■□□□ 1.19
CLN3-240ENST00000631023 USP41Q3LFD5 358 aa22.51■■□□□ 1.19
CLN3-240ENST00000631023 RNF168Q8IYW5 571 aaPredicted RBP22.51■■□□□ 1.19
CLN3-240ENST00000631023 ENGASEQ8NFI3 743 aa22.51■■□□□ 1.19
CLN3-240ENST00000631023 TIGD1Q96MW7 591 aa22.51■■□□□ 1.19
CLN3-240ENST00000631023 IPO9Q96P70 1041 aaKnown RBP22.51■■□□□ 1.19
CLN3-240ENST00000631023 ASB7Q9H672 318 aa22.51■■□□□ 1.19
CLN3-240ENST00000631023 GOLGA2P5Q9HBQ8 144 aa22.51■■□□□ 1.19
CLN3-240ENST00000631023 UBQLN1Q9UMX0 589 aaKnown RBP22.51■■□□□ 1.19
CLN3-240ENST00000631023 TCF20Q9UGU0 1960 aaKnown RBP22.51■■□□□ 1.19
CLN3-240ENST00000631023 TRAPPC3O43617 180 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 PRR29P0C7W0 189 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 KCNA5P22460 613 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 HOXD13P35453 343 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 GLUD2P49448 558 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 SOX4Q06945 474 aaPredicted RBP22.5■■□□□ 1.19
CLN3-240ENST00000631023 BMT2Q1RMZ1 405 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 HS2ST1Q7LGA3 356 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 HASPINQ8TF76 798 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 AUTS2Q8WXX7 1259 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 C18orf25Q96B23 403 aaPredicted RBP22.5■■□□□ 1.19
CLN3-240ENST00000631023 FAM213AQ9BRX8 229 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 EMILIN2Q9BXX0 1053 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 GPR62Q9BZJ7 368 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 VWA8A3KMH1 1905 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 MTCL1Q9Y4B5 1905 aaKnown RBP22.5■■□□□ 1.19
CLN3-240ENST00000631023 EXTL3O43909 919 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 IL18RAPO95256 599 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 SRGAP2BP0DMP2 458 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 CYP3A5P20815 502 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 TFF2Q03403 129 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 SPAG1Q07617 926 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 STK4Q13043 487 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 PTPN14Q15678 1187 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 ZBTB6Q15916 424 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 TAS1R1Q7RTX1 841 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 NELFCDQ8IXH7 590 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 GPR65Q8IYL9 337 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 CBWD1Q9BRT8 395 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 CGNQ9P2M7 1197 aaKnown RBP22.5■■□□□ 1.19
CLN3-240ENST00000631023 DERAQ9Y315 318 aa22.5■■□□□ 1.19
CLN3-240ENST00000631023 PODXLO00592 558 aa22.49■■□□□ 1.19
CLN3-240ENST00000631023 C2CD2LO14523 706 aa22.49■■□□□ 1.19
CLN3-240ENST00000631023 RHOBTB3O94955 611 aa22.49■■□□□ 1.19
CLN3-240ENST00000631023 KIF20AO95235 890 aa22.49■■□□□ 1.19
CLN3-240ENST00000631023 NDUFV1P49821 464 aa22.49■■□□□ 1.19
CLN3-240ENST00000631023 DSG1Q02413 1049 aa22.49■■□□□ 1.19
CLN3-240ENST00000631023 KNOP1Q1ED39 458 aaKnown RBP22.49■■□□□ 1.19
CLN3-240ENST00000631023 FAM171A1Q5VUB5 890 aa22.49■■□□□ 1.19
CLN3-240ENST00000631023 CRELD2Q6UXH1 353 aaPredicted RBP22.49■■□□□ 1.19
CLN3-240ENST00000631023 GPD1LQ8N335 351 aa22.49■■□□□ 1.19
CLN3-240ENST00000631023 SAAL1Q96ER3 474 aa22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms