RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 ZBTB41Q5SVQ8 909 aa19.68■□□□□ 0.74
CLN3-239ENST00000628023 ADHFE1Q8IWW8 467 aa19.68■□□□□ 0.74
CLN3-239ENST00000628023 SAAL1Q96ER3 474 aa19.68■□□□□ 0.74
CLN3-239ENST00000628023 CBWD1Q9BRT8 395 aa19.68■□□□□ 0.74
CLN3-239ENST00000628023 TMEM175Q9BSA9 504 aa19.68■□□□□ 0.74
CLN3-239ENST00000628023 PCIF1Q9H4Z3 704 aa19.68■□□□□ 0.74
CLN3-239ENST00000628023 AGPAT3Q9NRZ7 376 aa19.68■□□□□ 0.74
CLN3-239ENST00000628023 SPG21Q9NZD8 308 aa19.68■□□□□ 0.74
CLN3-239ENST00000628023 DNAJB4Q9UDY4 337 aa19.68■□□□□ 0.74
CLN3-239ENST00000628023 TDRD15B5MCY1 1934 aaKnown RBP19.67■□□□□ 0.74
CLN3-239ENST00000628023 FGF18O76093 207 aa19.67■□□□□ 0.74
CLN3-239ENST00000628023 HOXD13P35453 343 aa19.67■□□□□ 0.74
CLN3-239ENST00000628023 PLA2G5P39877 138 aa19.67■□□□□ 0.74
CLN3-239ENST00000628023 SLC11A1P49279 550 aa19.67■□□□□ 0.74
CLN3-239ENST00000628023 NDUFV1P49821 464 aa19.67■□□□□ 0.74
CLN3-239ENST00000628023 UBE3AQ05086 875 aa19.67■□□□□ 0.74
CLN3-239ENST00000628023 ADAM15Q13444 863 aa19.67■□□□□ 0.74
CLN3-239ENST00000628023 GSTCDQ8NEC7 633 aa19.67■□□□□ 0.74
CLN3-239ENST00000628023 GOLGA5Q8TBA6 731 aa19.67■□□□□ 0.74
CLN3-239ENST00000628023 MICAL1Q8TDZ2 1067 aa19.67■□□□□ 0.74
CLN3-239ENST00000628023 TMEM169Q96HH4 297 aa19.67■□□□□ 0.74
CLN3-239ENST00000628023 FAM213AQ9BRX8 229 aa19.67■□□□□ 0.74
CLN3-239ENST00000628023 SLC38A7Q9NVC3 462 aa19.67■□□□□ 0.74
CLN3-239ENST00000628023 CNTN3Q9P232 1028 aa19.67■□□□□ 0.74
CLN3-239ENST00000628023 CD207Q9UJ71 328 aa19.67■□□□□ 0.74
CLN3-239ENST00000628023 MAPK8IP1Q9UQF2 711 aa19.67■□□□□ 0.74
CLN3-239ENST00000628023 FAN1Q9Y2M0 1017 aa19.67■□□□□ 0.74
CLN3-239ENST00000628023 PRG3Q9Y2Y8 225 aaPredicted RBP19.67■□□□□ 0.74
CLN3-239ENST00000628023 CITO14578 2027 aa19.66■□□□□ 0.74
CLN3-239ENST00000628023 GOLGA8IPA6NC78 632 aa19.66■□□□□ 0.74
CLN3-239ENST00000628023 FAM86C2PA6NEL3 165 aa19.66■□□□□ 0.74
CLN3-239ENST00000628023 CASTOR2A6NHX0 329 aa19.66■□□□□ 0.74
CLN3-239ENST00000628023 GOLGA8JA6NMD2 632 aa19.66■□□□□ 0.74
CLN3-239ENST00000628023 NT5C1B-RDH14C9J2C7 533 aa19.66■□□□□ 0.74
CLN3-239ENST00000628023 KIAA0391O15091 583 aaKnown RBP19.66■□□□□ 0.74
CLN3-239ENST00000628023 CLIC2O15247 247 aa19.66■□□□□ 0.74
CLN3-239ENST00000628023 FAM189A1O60320 539 aa19.66■□□□□ 0.74
CLN3-239ENST00000628023 B4GALT3O60512 393 aa19.66■□□□□ 0.74
CLN3-239ENST00000628023 LDHAP00338 332 aaKnown RBP19.66■□□□□ 0.74
CLN3-239ENST00000628023 ALDH2P05091 517 aa19.66■□□□□ 0.74
CLN3-239ENST00000628023 GALTP07902 379 aa19.66■□□□□ 0.74
CLN3-239ENST00000628023 SNRPFP62306 86 aaKnown RBP19.66■□□□□ 0.74
CLN3-239ENST00000628023 KRT17Q04695 432 aa19.66■□□□□ 0.74
CLN3-239ENST00000628023 ZP2Q05996 745 aa19.66■□□□□ 0.74
CLN3-239ENST00000628023 TUSC3Q13454 348 aa19.66■□□□□ 0.74
CLN3-239ENST00000628023 CAMK1Q14012 370 aa19.66■□□□□ 0.74
CLN3-239ENST00000628023 CLUL1Q15846 466 aa19.66■□□□□ 0.74
CLN3-239ENST00000628023 ENOX2Q16206 610 aaKnown RBP19.66■□□□□ 0.74
CLN3-239ENST00000628023 SLC10A6Q3KNW5 377 aa19.66■□□□□ 0.74
CLN3-239ENST00000628023 ZNF658Q5TYW1 1059 aaPredicted RBP19.66■□□□□ 0.74
CLN3-239ENST00000628023 COLGALT2Q8IYK4 626 aa19.66■□□□□ 0.74
CLN3-239ENST00000628023 SMYD4Q8IYR2 804 aaPredicted RBP19.66■□□□□ 0.74
CLN3-239ENST00000628023 SLC39A11Q8N1S5 342 aa19.66■□□□□ 0.74
CLN3-239ENST00000628023 GTPBP4Q9BZE4 634 aaKnown RBP19.66■□□□□ 0.74
CLN3-239ENST00000628023 CXCL16Q9H2A7 254 aa19.66■□□□□ 0.74
CLN3-239ENST00000628023 PLEKHA5Q9HAU0 1116 aa19.66■□□□□ 0.74
CLN3-239ENST00000628023 HSPBP1Q9NZL4 362 aa19.66■□□□□ 0.74
CLN3-239ENST00000628023 CGNQ9P2M7 1197 aaKnown RBP19.66■□□□□ 0.74
CLN3-239ENST00000628023 CPSF3Q9UKF6 684 aaKnown RBP19.66■□□□□ 0.74
CLN3-239ENST00000628023 SMIM28A0A1B0GU29 152 aa19.65■□□□□ 0.74
CLN3-239ENST00000628023 FSD2A1L4K1 749 aa19.65■□□□□ 0.74
CLN3-239ENST00000628023 PRR33A8MZF0 331 aa19.65■□□□□ 0.74
CLN3-239ENST00000628023 TGFB1I1O43294 461 aa19.65■□□□□ 0.74
CLN3-239ENST00000628023 DCXO43602 365 aa19.65■□□□□ 0.74
CLN3-239ENST00000628023 EXTL3O43909 919 aa19.65■□□□□ 0.74
CLN3-239ENST00000628023 DNAJB1P25685 340 aa19.65■□□□□ 0.74
CLN3-239ENST00000628023 CYP2J2P51589 502 aa19.65■□□□□ 0.74
CLN3-239ENST00000628023 DSC1Q08554 894 aa19.65■□□□□ 0.74
CLN3-239ENST00000628023 SMAD4Q13485 552 aaKnown RBP19.65■□□□□ 0.74
CLN3-239ENST00000628023 SMAD2Q15796 467 aaKnown RBP19.65■□□□□ 0.74
CLN3-239ENST00000628023 GPD1LQ8N335 351 aa19.65■□□□□ 0.74
CLN3-239ENST00000628023 GUF1Q8N442 669 aaKnown RBP19.65■□□□□ 0.74
CLN3-239ENST00000628023 EFHBQ8N7U6 833 aa19.65■□□□□ 0.74
CLN3-239ENST00000628023 KIF12Q96FN5 646 aa19.65■□□□□ 0.74
CLN3-239ENST00000628023 NUP62CLQ9H1M0 184 aa19.65■□□□□ 0.74
CLN3-239ENST00000628023 CLSTN2Q9H4D0 955 aa19.65■□□□□ 0.74
CLN3-239ENST00000628023 PUF60Q9UHX1 559 aaKnown RBP19.65■□□□□ 0.74
CLN3-239ENST00000628023 MAN1B1Q9UKM7 699 aa19.65■□□□□ 0.74
CLN3-239ENST00000628023 LACTBL1A8MY62 500 aa19.64■□□□□ 0.73
CLN3-239ENST00000628023 NRP1O14786 923 aa19.64■□□□□ 0.73
CLN3-239ENST00000628023 MBTPS2O43462 519 aa19.64■□□□□ 0.73
CLN3-239ENST00000628023 CALUO43852 315 aaPredicted RBP19.64■□□□□ 0.73
CLN3-239ENST00000628023 KCNE1P15382 129 aa19.64■□□□□ 0.73
CLN3-239ENST00000628023 GTF2F1P35269 517 aaKnown RBP eCLIP19.64■□□□□ 0.73
CLN3-239ENST00000628023 NRIP1P48552 1158 aa19.64■□□□□ 0.73
CLN3-239ENST00000628023 SPAG1Q07617 926 aa19.64■□□□□ 0.73
CLN3-239ENST00000628023 DLX2Q07687 328 aaPredicted RBP19.64■□□□□ 0.73
CLN3-239ENST00000628023 STIM1Q13586 685 aa19.64■□□□□ 0.73
CLN3-239ENST00000628023 HSP90AA2PQ14568 343 aaPredicted RBP19.64■□□□□ 0.73
CLN3-239ENST00000628023 XKR4Q5GH76 650 aa19.64■□□□□ 0.73
CLN3-239ENST00000628023 ISM2Q6H9L7 571 aa19.64■□□□□ 0.73
CLN3-239ENST00000628023 PDE12Q6L8Q7 609 aaKnown RBP19.64■□□□□ 0.73
CLN3-239ENST00000628023 ALKAL1Q6UXT8 129 aa19.64■□□□□ 0.73
CLN3-239ENST00000628023 CD302Q8IX05 232 aa19.64■□□□□ 0.73
CLN3-239ENST00000628023 SPATA20Q8TB22 786 aa19.64■□□□□ 0.73
CLN3-239ENST00000628023 PPP1R10Q96QC0 940 aaKnown RBP19.64■□□□□ 0.73
CLN3-239ENST00000628023 COLEC11Q9BWP8 271 aa19.64■□□□□ 0.73
CLN3-239ENST00000628023 C11orf16Q9NQ32 467 aa19.64■□□□□ 0.73
CLN3-239ENST00000628023 RBAKQ9NYW8 714 aaPredicted RBP19.64■□□□□ 0.73
CLN3-239ENST00000628023 CACNG4Q9UBN1 327 aa19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms